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The map label for this gene is ydaM [H]

Identifier: 238920501

GI number: 238920501

Start: 2502680

End: 2503588

Strand: Reverse

Name: ydaM [H]

Synonym: NT01EI_2613

Alternate gene names: 238920501

Gene position: 2503588-2502680 (Counterclockwise)

Preceding gene: 238920502

Following gene: 238920498

Centisome position: 65.67

GC content: 58.75

Gene sequence:

>909_bases
ATGGCACAATACAGCGATCCGATGCTGCCGCGGCGTGGCTTTACCTGGTTGCGGGCGCTGTATTTGCTGTCGCTTGGGCC
ACTGTTGCTGCTGCTGGCCATGTTGCACCTGCTGTATTTACCGCACTATCCGGCACGGCGCTTTAATGGTTTTGCCTTTT
CACTGGAACTGGTGGAGTACCTGACCGTTTTGCTGATGCTGGTGGCGGTACAGTTTTCTGCGCTGGATCGTCGCTCCTAC
TGGGTTTTGAACAGCGGTCTGACCCTATGGATACTGAGCGGGGTGCTGGATCTGCTGGATGAGGTAGTGCAGCAGCCGGT
ATGGCTCGGTAATCTGGAGGATGTACTGCGTGCTATCGGCATGGTGATGTGCGCCTGGGGCGGTATCTGTACTCTGCGTT
ATCTTGCCCGGGTACGGGGACGACTGCGCTATCTGGCGCTGTTTGACGACCTGACCGGGTTACCCAACCGGCGCCATTTT
TACTCAAGCCTGATGTCTCAGCCACTGCCACGTCACTTCTCGCTGTTTATTATCGATCTTGACCACTTTAAACAGATTAA
CGATGAGTTTGGACATGCCGTTGGCGATCGGGTGCTGTGCCAGTTTGGCCGCCTGTTGCACAGTGAGTTCGTCTCCCCGG
CCTTTCCGGCCCGCATCGGCGGCGAGGAGTTTGCCGTGGTTCTGGAGAGCGAGGATCGGGCATGGCTGGAGACCCGCGCG
GCACGCTTGCTGCAGCAGGCCAGTATGGTGCGGATTACCGAACAGCGCGGGCTGACCGTAAGCATTGGCGTGGGGATCTA
TGCGGCCGGTGAAACGCTGGCGCATTTTGTGGCGCGGGTGGACGGCGGGTTGTATCAGGCTAAGGGTGCCGGGCGTAACA
ACTATCGCTGGAGCCCGCCGCCTCAGTGA

Upstream 100 bases:

>100_bases
TATATAATAATTTCAATAAATTAAAACTGTATCTTACGATTACTCCACCATGAGGCAGCTGGGGATGAGAGGTCTTTTCG
GCGATAGGCGCCAGCGTTCT

Downstream 100 bases:

>100_bases
GGGTGTGGCGATGCTAAGCGCCGATCGCGGTTCGCAATCATACATCTGGACTATGGGTATCCGGATAGACGGCGTTGGGT
GAGGGAGTCCGATAGATCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MAQYSDPMLPRRGFTWLRALYLLSLGPLLLLLAMLHLLYLPHYPARRFNGFAFSLELVEYLTVLLMLVAVQFSALDRRSY
WVLNSGLTLWILSGVLDLLDEVVQQPVWLGNLEDVLRAIGMVMCAWGGICTLRYLARVRGRLRYLALFDDLTGLPNRRHF
YSSLMSQPLPRHFSLFIIDLDHFKQINDEFGHAVGDRVLCQFGRLLHSEFVSPAFPARIGGEEFAVVLESEDRAWLETRA
ARLLQQASMVRITEQRGLTVSIGVGIYAAGETLAHFVARVDGGLYQAKGAGRNNYRWSPPPQ

Sequences:

>Translated_302_residues
MAQYSDPMLPRRGFTWLRALYLLSLGPLLLLLAMLHLLYLPHYPARRFNGFAFSLELVEYLTVLLMLVAVQFSALDRRSY
WVLNSGLTLWILSGVLDLLDEVVQQPVWLGNLEDVLRAIGMVMCAWGGICTLRYLARVRGRLRYLALFDDLTGLPNRRHF
YSSLMSQPLPRHFSLFIIDLDHFKQINDEFGHAVGDRVLCQFGRLLHSEFVSPAFPARIGGEEFAVVLESEDRAWLETRA
ARLLQQASMVRITEQRGLTVSIGVGIYAAGETLAHFVARVDGGLYQAKGAGRNNYRWSPPPQ
>Mature_301_residues
AQYSDPMLPRRGFTWLRALYLLSLGPLLLLLAMLHLLYLPHYPARRFNGFAFSLELVEYLTVLLMLVAVQFSALDRRSYW
VLNSGLTLWILSGVLDLLDEVVQQPVWLGNLEDVLRAIGMVMCAWGGICTLRYLARVRGRLRYLALFDDLTGLPNRRHFY
SSLMSQPLPRHFSLFIIDLDHFKQINDEFGHAVGDRVLCQFGRLLHSEFVSPAFPARIGGEEFAVVLESEDRAWLETRAA
RLLQQASMVRITEQRGLTVSIGVGIYAAGETLAHFVARVDGGLYQAKGAGRNNYRWSPPPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=37.7245508982036, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=32.2033898305085, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787802, Length=172, Percent_Identity=33.1395348837209, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787262, Length=156, Percent_Identity=31.4102564102564, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788085, Length=159, Percent_Identity=29.559748427673, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787541, Length=183, Percent_Identity=28.9617486338798, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=31.9277108433735, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=37.2781065088757, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=30.8641975308642, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081977, Length=103, Percent_Identity=41.747572815534, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787056, Length=155, Percent_Identity=32.258064516129, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788381, Length=189, Percent_Identity=30.1587301587302, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 34282; Mature: 34150

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQYSDPMLPRRGFTWLRALYLLSLGPLLLLLAMLHLLYLPHYPARRFNGFAFSLELVEY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHH
LTVLLMLVAVQFSALDRRSYWVLNSGLTLWILSGVLDLLDEVVQQPVWLGNLEDVLRAIG
HHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
MVMCAWGGICTLRYLARVRGRLRYLALFDDLTGLPNRRHFYSSLMSQPLPRHFSLFIIDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEEH
DHFKQINDEFGHAVGDRVLCQFGRLLHSEFVSPAFPARIGGEEFAVVLESEDRAWLETRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHH
ARLLQQASMVRITEQRGLTVSIGVGIYAAGETLAHFVARVDGGLYQAKGAGRNNYRWSPP
HHHHHHHHHHHHHHHCCCEEEECCCEEEHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCC
PQ
CC
>Mature Secondary Structure 
AQYSDPMLPRRGFTWLRALYLLSLGPLLLLLAMLHLLYLPHYPARRFNGFAFSLELVEY
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHH
LTVLLMLVAVQFSALDRRSYWVLNSGLTLWILSGVLDLLDEVVQQPVWLGNLEDVLRAIG
HHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
MVMCAWGGICTLRYLARVRGRLRYLALFDDLTGLPNRRHFYSSLMSQPLPRHFSLFIIDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEEH
DHFKQINDEFGHAVGDRVLCQFGRLLHSEFVSPAFPARIGGEEFAVVLESEDRAWLETRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHH
ARLLQQASMVRITEQRGLTVSIGVGIYAAGETLAHFVARVDGGLYQAKGAGRNNYRWSPP
HHHHHHHHHHHHHHHCCCEEEECCCEEEHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCC
PQ
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]