| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is hsdM [C]
Identifier: 238920395
GI number: 238920395
Start: 2403466
End: 2405874
Strand: Reverse
Name: hsdM [C]
Synonym: NT01EI_2505
Alternate gene names: 238920395
Gene position: 2405874-2403466 (Counterclockwise)
Preceding gene: 238920398
Following gene: 238920394
Centisome position: 63.11
GC content: 53.8
Gene sequence:
>2409_bases ATGGATCACAGTGTTCATAACAAACTCGTCTCTTTTATCTGGAACATCGCCGACGACTGCCTGCGCGACGTTTACGTCCG TGGCAAATACCGTGATGTGATCTTGCCGATGGTGGTATTGCGCCGCCTGGATACCCTGCTCGAACCCACCAAGGAAGCGG TTCTGGAAGAGGTCCGCTTCCAGCAGCAGGAGATGAACGCAGTTGAACTGGACGAAGAGCCGCTCAAGGCCGCCTCTGGC TATGTCTTCTACAACATCTCCAAGTGGACGCTCAAATCCCTGTTGAACGCAGCCACCAACAACCAGCAAATTCTGCTGGC AAACGTCAATGAATACCTCAACGGCTTCAGCGATAACGTCACGGAGATCGTCAACTGCTTTAACCTCAGGGCGCAGATCC GCCATATGGCTGACAAGCAGGTGCTGCTCGATGTGATCGAGAAGTTCGTCTCCCCCTATATCAACCTCACCCCCAACGAT ATTGAAGATCCGGAAGGTAACAAGCTGCCTGCGCTGACCAACCTTGGGATGGGGTATGTGTTTGAAGAGCTAATCCGCAA ATTCAACGAAGAGAACAACGAGGAGGCCGGGGAACACTTCACCCCGCGCGAGGTGATCGAACTGATGACCCACCTGGTAT TTGATCCTATCAAGGATCAACTGCCGCTCACCATGACGATCTATGACCCCGCCTGTGGCAGCGGCGGTATGCTGACCGAA TCCCAGGGCTTTATCGCAGAGAAGTACCCAGCTACCGGTGTCAGCCGTGATATTTACCTCTATGGCAAGGAGATCAACGA CGAGACTTATGCGATTTGTAAGTCCGACATGATGATCCGGGGCAATGACCCGGCCAACATTAAGGTGGGCTCCACCCTGT CCACCGATGAATTCTCCCATATGCGCTTTGACTTTATGCTCTCCAACCCACCCTACGGCAAAAGCTGGGCCTCAGAGCAA AAACACATCAAAGATGGCAACGAGGTGATCGACAGCCGCTTCAAGGTAAAACTGGCCGATTACTGGGGTGTGGTCGCTCC CAAAGACTGTGATGCCACCCCGCGCTCCAGCGATGGTCAGCTGCTGTTCCTGATGGAGATGGTCAACAAGATGAAATCCC CATCGGTAAGCCCGCTGGGCAGCCGAATCGCCTCGGTGCATAACGGCTCCAGCCTGTTTACCGGCGATGCGGGCAGTGGC GAGAGCAATATCCGTCGCTACCTTATCGAAAACGACATGCTCGAGGCGATTGTCCAGCTGCCGAACAACCTGTTTTATAA CACCGGCATCACCACCTATATCTGGTTGCTGAACAACCACAAGCCTGCCTCTCGCCAAGGCAAGGTGCAGCTTATCGATG CCAGCCTGCTCTATCGCAAGCTGCGCAAGAATCTGGGCGAAAAAAATTGCGAACTCTCTCCCGAACATATCGAGGAGATC ACCCAAACTTGCCTCGCCTGTGCCAATGTAGAGCGCCAGCTGGATAGCAATAACGATCCGGTCGGCATCGCCAGCAAGGT GTTTAAAAACGAGGACTTTGGTTACTACAAGGTGACAGTAGAGCGCCCGGATCGTCGCAAGGCCCAGTTCAGTAGTGAAC GTCTCAACGCCCTGCGTTTTGATAAATCCTTACACGAGGTGATGGCACACTGCTTTGCTGAGTATGGCGAGCAGGTCTAT CAGGAGGGGGGCCTGACCCGCCACAGCAAGCCGATCCTGGAGTGGTGCGAGAAAAATGAGATAAGTCTGAACAACAAGGC CAAAGAGAAGCTGCAGAGCAGCACTTTCTGGTGCGCGGCCCGCACCCTGTTCGACACGGCGCATACCCTGATGCGGGAGA TCGGCGAAGCCGAGTTTAACGATTTCAACCGGTTTAAGGCCCAGGTTGAGGCAACGCTCAAGGCGCAAAAGCTCAAACTC TCCGTCACAGAAAAAAATGCCCTGTTCAATGCCGTGAGCTGGTATGACGAAACTGCCGCTAAGGTGGTGAAAAAGGTGGT GAAGCTCAGTGCCGACAAGCTGGGTGAACTGCTGGAGCTCTACAGCTGTGAAGAGGCCGACCTGCCCGATTTTGGTTACT ACCCTTATCCGCCAGAACAAGGGGGCAAAAAAGGCGAGTTCGTTACCTATGAGAGCAGCAGCGATCTGCGCGATAGCGAA TCGGTGCCGCTTACCCAGAGTATCTACCAGTACTTCCTTGACGAGGTCAAGCCCCATGTGGCAGAGGCCTGGCTCAATAT GGAGTCGGTCAAGATTGGCTATGAGGTGAGTTTTAACAAATATTTCTACCGCCATAAATCGCTGCGTTCACTCGAGACAG TCGCCCAGGAGATCCTGACGCTGGAACAGCAGGCCGATGGCTTGATTGCCCAGATTTTGGGGCTCACTGCACCCAATACC CAGGCATAA
Upstream 100 bases:
>100_bases GCTTCCCATCATCCGGCAAAACCAAGGGCCATGCGTATGCGGTGAATCCCTCAGGCCCCACTTTTTGCATTCCGGGGTAA CCCGGAGACAGGAAAACAAC
Downstream 100 bases:
>100_bases GCAGGAGACAATACAGATGACGCTAACTGCCATGCCGAAATATGATACCTATAAAAACTCTGGGGTCGAGTGGATTGAGC AAGTTCCAGAGGGATGGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: M.MjaXP [H]
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MDHSVHNKLVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRFQQQEMNAVELDEEPLKAASG YVFYNISKWTLKSLLNAATNNQQILLANVNEYLNGFSDNVTEIVNCFNLRAQIRHMADKQVLLDVIEKFVSPYINLTPND IEDPEGNKLPALTNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDQLPLTMTIYDPACGSGGMLTE SQGFIAEKYPATGVSRDIYLYGKEINDETYAICKSDMMIRGNDPANIKVGSTLSTDEFSHMRFDFMLSNPPYGKSWASEQ KHIKDGNEVIDSRFKVKLADYWGVVAPKDCDATPRSSDGQLLFLMEMVNKMKSPSVSPLGSRIASVHNGSSLFTGDAGSG ESNIRRYLIENDMLEAIVQLPNNLFYNTGITTYIWLLNNHKPASRQGKVQLIDASLLYRKLRKNLGEKNCELSPEHIEEI TQTCLACANVERQLDSNNDPVGIASKVFKNEDFGYYKVTVERPDRRKAQFSSERLNALRFDKSLHEVMAHCFAEYGEQVY QEGGLTRHSKPILEWCEKNEISLNNKAKEKLQSSTFWCAARTLFDTAHTLMREIGEAEFNDFNRFKAQVEATLKAQKLKL SVTEKNALFNAVSWYDETAAKVVKKVVKLSADKLGELLELYSCEEADLPDFGYYPYPPEQGGKKGEFVTYESSSDLRDSE SVPLTQSIYQYFLDEVKPHVAEAWLNMESVKIGYEVSFNKYFYRHKSLRSLETVAQEILTLEQQADGLIAQILGLTAPNT QA
Sequences:
>Translated_802_residues MDHSVHNKLVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRFQQQEMNAVELDEEPLKAASG YVFYNISKWTLKSLLNAATNNQQILLANVNEYLNGFSDNVTEIVNCFNLRAQIRHMADKQVLLDVIEKFVSPYINLTPND IEDPEGNKLPALTNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDQLPLTMTIYDPACGSGGMLTE SQGFIAEKYPATGVSRDIYLYGKEINDETYAICKSDMMIRGNDPANIKVGSTLSTDEFSHMRFDFMLSNPPYGKSWASEQ KHIKDGNEVIDSRFKVKLADYWGVVAPKDCDATPRSSDGQLLFLMEMVNKMKSPSVSPLGSRIASVHNGSSLFTGDAGSG ESNIRRYLIENDMLEAIVQLPNNLFYNTGITTYIWLLNNHKPASRQGKVQLIDASLLYRKLRKNLGEKNCELSPEHIEEI TQTCLACANVERQLDSNNDPVGIASKVFKNEDFGYYKVTVERPDRRKAQFSSERLNALRFDKSLHEVMAHCFAEYGEQVY QEGGLTRHSKPILEWCEKNEISLNNKAKEKLQSSTFWCAARTLFDTAHTLMREIGEAEFNDFNRFKAQVEATLKAQKLKL SVTEKNALFNAVSWYDETAAKVVKKVVKLSADKLGELLELYSCEEADLPDFGYYPYPPEQGGKKGEFVTYESSSDLRDSE SVPLTQSIYQYFLDEVKPHVAEAWLNMESVKIGYEVSFNKYFYRHKSLRSLETVAQEILTLEQQADGLIAQILGLTAPNT QA >Mature_802_residues MDHSVHNKLVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRFQQQEMNAVELDEEPLKAASG YVFYNISKWTLKSLLNAATNNQQILLANVNEYLNGFSDNVTEIVNCFNLRAQIRHMADKQVLLDVIEKFVSPYINLTPND IEDPEGNKLPALTNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDQLPLTMTIYDPACGSGGMLTE SQGFIAEKYPATGVSRDIYLYGKEINDETYAICKSDMMIRGNDPANIKVGSTLSTDEFSHMRFDFMLSNPPYGKSWASEQ KHIKDGNEVIDSRFKVKLADYWGVVAPKDCDATPRSSDGQLLFLMEMVNKMKSPSVSPLGSRIASVHNGSSLFTGDAGSG ESNIRRYLIENDMLEAIVQLPNNLFYNTGITTYIWLLNNHKPASRQGKVQLIDASLLYRKLRKNLGEKNCELSPEHIEEI TQTCLACANVERQLDSNNDPVGIASKVFKNEDFGYYKVTVERPDRRKAQFSSERLNALRFDKSLHEVMAHCFAEYGEQVY QEGGLTRHSKPILEWCEKNEISLNNKAKEKLQSSTFWCAARTLFDTAHTLMREIGEAEFNDFNRFKAQVEATLKAQKLKL SVTEKNALFNAVSWYDETAAKVVKKVVKLSADKLGELLELYSCEEADLPDFGYYPYPPEQGGKKGEFVTYESSSDLRDSE SVPLTQSIYQYFLDEVKPHVAEAWLNMESVKIGYEVSFNKYFYRHKSLRSLETVAQEILTLEQQADGLIAQILGLTAPNT QA
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 91126; Mature: 91126
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDHSVHNKLVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRF CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQQEMNAVELDEEPLKAASGYVFYNISKWTLKSLLNAATNNQQILLANVNEYLNGFSDNV HHHHCCCCCCCCHHHHHHCCEEEEECHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCH TEIVNCFNLRAQIRHMADKQVLLDVIEKFVSPYINLTPNDIEDPEGNKLPALTNLGMGYV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCHHHCCHHHH FEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDQLPLTMTIYDPACGSGGMLTE HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEC SQGFIAEKYPATGVSRDIYLYGKEINDETYAICKSDMMIRGNDPANIKVGSTLSTDEFSH CCCCEECCCCCCCCCCEEEEEECCCCCCHHEEECCCEEEECCCCCCEEECCCCCCCCHHH MRFDFMLSNPPYGKSWASEQKHIKDGNEVIDSRFKVKLADYWGVVAPKDCDATPRSSDGQ EEEEEEECCCCCCCCHHHHHHHHCCCHHHHCCHHEEEEHHHCCCCCCCCCCCCCCCCCCC LLFLMEMVNKMKSPSVSPLGSRIASVHNGSSLFTGDAGSGESNIRRYLIENDMLEAIVQL EEEHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHC PNNLFYNTGITTYIWLLNNHKPASRQGKVQLIDASLLYRKLRKNLGEKNCELSPEHIEEI CCCEEECCCCEEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHH TQTCLACANVERQLDSNNDPVGIASKVFKNEDFGYYKVTVERPDRRKAQFSSERLNALRF HHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH DKSLHEVMAHCFAEYGEQVYQEGGLTRHSKPILEWCEKNEISLNNKAKEKLQSSTFWCAA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH RTLFDTAHTLMREIGEAEFNDFNRFKAQVEATLKAQKLKLSVTEKNALFNAVSWYDETAA HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHH KVVKKVVKLSADKLGELLELYSCEEADLPDFGYYPYPPEQGGKKGEFVTYESSSDLRDSE HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC SVPLTQSIYQYFLDEVKPHVAEAWLNMESVKIGYEVSFNKYFYRHKSLRSLETVAQEILT CCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH LEQQADGLIAQILGLTAPNTQA HHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MDHSVHNKLVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRF CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQQEMNAVELDEEPLKAASGYVFYNISKWTLKSLLNAATNNQQILLANVNEYLNGFSDNV HHHHCCCCCCCCHHHHHHCCEEEEECHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCH TEIVNCFNLRAQIRHMADKQVLLDVIEKFVSPYINLTPNDIEDPEGNKLPALTNLGMGYV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCHHHCCHHHH FEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDQLPLTMTIYDPACGSGGMLTE HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEC SQGFIAEKYPATGVSRDIYLYGKEINDETYAICKSDMMIRGNDPANIKVGSTLSTDEFSH CCCCEECCCCCCCCCCEEEEEECCCCCCHHEEECCCEEEECCCCCCEEECCCCCCCCHHH MRFDFMLSNPPYGKSWASEQKHIKDGNEVIDSRFKVKLADYWGVVAPKDCDATPRSSDGQ EEEEEEECCCCCCCCHHHHHHHHCCCHHHHCCHHEEEEHHHCCCCCCCCCCCCCCCCCCC LLFLMEMVNKMKSPSVSPLGSRIASVHNGSSLFTGDAGSGESNIRRYLIENDMLEAIVQL EEEHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHC PNNLFYNTGITTYIWLLNNHKPASRQGKVQLIDASLLYRKLRKNLGEKNCELSPEHIEEI CCCEEECCCCEEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHH TQTCLACANVERQLDSNNDPVGIASKVFKNEDFGYYKVTVERPDRRKAQFSSERLNALRF HHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH DKSLHEVMAHCFAEYGEQVYQEGGLTRHSKPILEWCEKNEISLNNKAKEKLQSSTFWCAA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH RTLFDTAHTLMREIGEAEFNDFNRFKAQVEATLKAQKLKLSVTEKNALFNAVSWYDETAA HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHH KVVKKVVKLSADKLGELLELYSCEEADLPDFGYYPYPPEQGGKKGEFVTYESSSDLRDSE HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC SVPLTQSIYQYFLDEVKPHVAEAWLNMESVKIGYEVSFNKYFYRHKSLRSLETVAQEILT CCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH LEQQADGLIAQILGLTAPNTQA HHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]