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The map label for this gene is hsdS [C]

Identifier: 238920394

GI number: 238920394

Start: 2402142

End: 2403449

Strand: Reverse

Name: hsdS [C]

Synonym: NT01EI_2504

Alternate gene names: 238920394

Gene position: 2403449-2402142 (Counterclockwise)

Preceding gene: 238920395

Following gene: 238920393

Centisome position: 63.04

GC content: 40.29

Gene sequence:

>1308_bases
ATGACGCTAACTGCCATGCCGAAATATGATACCTATAAAAACTCTGGGGTCGAGTGGATTGAGCAAGTTCCAGAGGGATG
GGGGCTCGTAAAAATTAAGAACTACGCTGATGTTTTTAATGGTGATAGTTTAAATGATAAACAAAAAGCCAAGTATGAAT
CTGAGGACCAGAGTCATCGCTCATATATTTCATCAAAGGATATAGATGTAAATTACTCAAAAATCAACTACCAGAATGGA
CTACGTATTCCTAAAGGAAGTAGCTATAAGGTTTGCCCATCGAACTCAACTTTAATGTGTATTGAGGGTGGTAGCGCAGG
TAAGAAGATTGCATATACCAATCAAGAGGTTTGCTTTGTTAATAAGCTGGCGTGTTTTTTGGCAAGTAAACGCATTGATA
GTCATTTCCTTTATTACTACTTAAGCAGTGTTACTTTTAAAAGTCAGTTTTTTAACTCAATGACAGGTTTGATCGGTGGG
GTTTCAATTTCAGCAATCAAGAATTTTTGGCTTGTATTGCCTTCGCCAACTGAACAAGTAGCCATTGCTAGCTTTCTCAG
TAAAAAGTTATCTCAAATAGATGAAGCGATTACGACTAAAGAGCAGCAAATTAGCCTGCTAAAAGAGCGCAAGCAGATCC
TGATTCAGCAGGCAGCAACTCAAGGCCTCGACCCCTGTGTACCGATGAAAGATTCCGGTGTTGATTGGATTGGAAAAATT
CCAGAACATTGGCAGGTCATTCGATTTAAAAATTTGTTTTCACAAAGCCGAATCCCTGTTCGGAAAGAAGATGGAGTAGT
GACTTCGTATCGAGATGGGCAGGTCACTCTTCGTTCAAATCGGCGATTAGACGGTTACACAGAAGCCATTATTGAGGGGG
GGTATCAGGGTATTCGAAAGGGGCAGCTCGTTCTAAACTCAATGGATGCGTTTGAAGGTGCTATAGGAGTATCTGAGTCT
GATGGTAAGTGTACTCCTGAATACGTAATTTGTGACCCTGTTAGAGCAGATGTCTCCCAATACTATTTCGCCTATTTGCT
TCGTGAGATGGCATTGGCAAAATACATTCAAGTTATCTGCAATGCAGTAAGGCAGCGTGCAGTCAGGATTAGATTTAATA
ATTTGGCCTCTAGGTTTATGGTGCTGCCACCTTCTGATGAGCAAGAAAAAATCGTTGAATTTATAGAGTCTGAAAAAGGA
AAGATTAATAAGGGGGTTGAACACCTTAAAGGTCAAATAGAAAAACTAAAGGAATACAAAACCACCCTGATTAATAGTGC
CGTCACTGGCAAGATTAAGGTGGTCTAG

Upstream 100 bases:

>100_bases
CAGGAGATCCTGACGCTGGAACAGCAGGCCGATGGCTTGATTGCCCAGATTTTGGGGCTCACTGCACCCAATACCCAGGC
ATAAGCAGGAGACAATACAG

Downstream 100 bases:

>100_bases
CCATGCCCTATCAACCACCGTTTCAGCTCACCCACACCATGCTGCGCCATGTGGCCCGTATCGGCGAACTGATTGGCATG
TGGAAAGCGGCCAACCAAAA

Product: restriction modification system DNA specificity domain protein

Products: NA

Alternate protein names: Restriction System DNA Specificity Domain Protein; Type I Restriction- System S Subunit; Type I Restriction- System Specificity Determinant; Type I Restriction- System Specificity Subunit; Restriction Endonuclease S Subunit; Type I Restriction S Subunit; Type I Restriction- System; Type I Site-Specific Restriction- System S Subunit; Type I Restriction Specificity Protein; Type I Restriction-; Type I Restriction DNA Specificity Domain Protein; Restriction System DNA Specificity Domain; Type I Restriction- Subunit S; Type I Restriction- System Specifity Subunit; Restriction Endonuclease S Subunits-Like; Type I Restriction System DNA Specificity Domain Protein; HsdS Protein; Type I Restriction DNA Specificity Protein; Type I DNA Specificity S Subunit; Type I Restriction- Methylase S Subunit; Type I Restriction-Mod; Type I Restriction System Specificity Protein HsdS; Type I Restriction- System Subunit S; Subunit S Of Type I Restriction- System; Type I Restriction- System Specificity Subunit S; N-6 DNA Methylase; Restriction Endonuclease S Subunits-Like Protein; Type I Restriction- System Specificity Protein; Type 1 Restriction- System Endonuclease Subunit; Type I Site-Specific Deoxyribonuclease; Restriction Endonuclease S Subunits

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MTLTAMPKYDTYKNSGVEWIEQVPEGWGLVKIKNYADVFNGDSLNDKQKAKYESEDQSHRSYISSKDIDVNYSKINYQNG
LRIPKGSSYKVCPSNSTLMCIEGGSAGKKIAYTNQEVCFVNKLACFLASKRIDSHFLYYYLSSVTFKSQFFNSMTGLIGG
VSISAIKNFWLVLPSPTEQVAIASFLSKKLSQIDEAITTKEQQISLLKERKQILIQQAATQGLDPCVPMKDSGVDWIGKI
PEHWQVIRFKNLFSQSRIPVRKEDGVVTSYRDGQVTLRSNRRLDGYTEAIIEGGYQGIRKGQLVLNSMDAFEGAIGVSES
DGKCTPEYVICDPVRADVSQYYFAYLLREMALAKYIQVICNAVRQRAVRIRFNNLASRFMVLPPSDEQEKIVEFIESEKG
KINKGVEHLKGQIEKLKEYKTTLINSAVTGKIKVV

Sequences:

>Translated_435_residues
MTLTAMPKYDTYKNSGVEWIEQVPEGWGLVKIKNYADVFNGDSLNDKQKAKYESEDQSHRSYISSKDIDVNYSKINYQNG
LRIPKGSSYKVCPSNSTLMCIEGGSAGKKIAYTNQEVCFVNKLACFLASKRIDSHFLYYYLSSVTFKSQFFNSMTGLIGG
VSISAIKNFWLVLPSPTEQVAIASFLSKKLSQIDEAITTKEQQISLLKERKQILIQQAATQGLDPCVPMKDSGVDWIGKI
PEHWQVIRFKNLFSQSRIPVRKEDGVVTSYRDGQVTLRSNRRLDGYTEAIIEGGYQGIRKGQLVLNSMDAFEGAIGVSES
DGKCTPEYVICDPVRADVSQYYFAYLLREMALAKYIQVICNAVRQRAVRIRFNNLASRFMVLPPSDEQEKIVEFIESEKG
KINKGVEHLKGQIEKLKEYKTTLINSAVTGKIKVV
>Mature_434_residues
TLTAMPKYDTYKNSGVEWIEQVPEGWGLVKIKNYADVFNGDSLNDKQKAKYESEDQSHRSYISSKDIDVNYSKINYQNGL
RIPKGSSYKVCPSNSTLMCIEGGSAGKKIAYTNQEVCFVNKLACFLASKRIDSHFLYYYLSSVTFKSQFFNSMTGLIGGV
SISAIKNFWLVLPSPTEQVAIASFLSKKLSQIDEAITTKEQQISLLKERKQILIQQAATQGLDPCVPMKDSGVDWIGKIP
EHWQVIRFKNLFSQSRIPVRKEDGVVTSYRDGQVTLRSNRRLDGYTEAIIEGGYQGIRKGQLVLNSMDAFEGAIGVSESD
GKCTPEYVICDPVRADVSQYYFAYLLREMALAKYIQVICNAVRQRAVRIRFNNLASRFMVLPPSDEQEKIVEFIESEKGK
INKGVEHLKGQIEKLKEYKTTLINSAVTGKIKVV

Specific function: The M And S Subunits Together Form A Methyltransferase (Mtase) That Methylates Two Adenine Residues In Complementary Strands Of A Bipartite DNA Recognition Sequence. In The Presence Of The R Subunit The Complex Can Also Act As An Endonuclease, Binding To

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49055; Mature: 48924

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTAMPKYDTYKNSGVEWIEQVPEGWGLVKIKNYADVFNGDSLNDKQKAKYESEDQSHR
CCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCHHHHCCCCCCCCHHHHCCCCCHHHHH
SYISSKDIDVNYSKINYQNGLRIPKGSSYKVCPSNSTLMCIEGGSAGKKIAYTNQEVCFV
HHHCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCEEEEEECCCCCCEEEECCCCHHHH
NKLACFLASKRIDSHFLYYYLSSVTFKSQFFNSMTGLIGGVSISAIKNFWLVLPSPTEQV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEECCCCHHHH
AIASFLSKKLSQIDEAITTKEQQISLLKERKQILIQQAATQGLDPCVPMKDSGVDWIGKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCC
PEHWQVIRFKNLFSQSRIPVRKEDGVVTSYRDGQVTLRSNRRLDGYTEAIIEGGYQGIRK
CHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCHHHHHC
GQLVLNSMDAFEGAIGVSESDGKCTPEYVICDPVRADVSQYYFAYLLREMALAKYIQVIC
CHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NAVRQRAVRIRFNNLASRFMVLPPSDEQEKIVEFIESEKGKINKGVEHLKGQIEKLKEYK
HHHHHHHHHHEEHHHCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TTLINSAVTGKIKVV
HHHHHHHCCCEEEEC
>Mature Secondary Structure 
TLTAMPKYDTYKNSGVEWIEQVPEGWGLVKIKNYADVFNGDSLNDKQKAKYESEDQSHR
CCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCHHHHCCCCCCCCHHHHCCCCCHHHHH
SYISSKDIDVNYSKINYQNGLRIPKGSSYKVCPSNSTLMCIEGGSAGKKIAYTNQEVCFV
HHHCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCEEEEEECCCCCCEEEECCCCHHHH
NKLACFLASKRIDSHFLYYYLSSVTFKSQFFNSMTGLIGGVSISAIKNFWLVLPSPTEQV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEECCCCHHHH
AIASFLSKKLSQIDEAITTKEQQISLLKERKQILIQQAATQGLDPCVPMKDSGVDWIGKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCC
PEHWQVIRFKNLFSQSRIPVRKEDGVVTSYRDGQVTLRSNRRLDGYTEAIIEGGYQGIRK
CHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCHHHHHC
GQLVLNSMDAFEGAIGVSESDGKCTPEYVICDPVRADVSQYYFAYLLREMALAKYIQVIC
CHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NAVRQRAVRIRFNNLASRFMVLPPSDEQEKIVEFIESEKGKINKGVEHLKGQIEKLKEYK
HHHHHHHHHHEEHHHCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TTLINSAVTGKIKVV
HHHHHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA