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The map label for this gene is ybjD [H]

Identifier: 238920387

GI number: 238920387

Start: 2392765

End: 2393655

Strand: Reverse

Name: ybjD [H]

Synonym: NT01EI_2497

Alternate gene names: 238920387

Gene position: 2393655-2392765 (Counterclockwise)

Preceding gene: 238920389

Following gene: 238920386

Centisome position: 62.79

GC content: 60.61

Gene sequence:

>891_bases
ATGTACCTGGAACGCATTGAGGTCGTAGGGTTTCGCGGGATTAATCGCATCTCGCTGTCGCTGGATGACAATACCGTTCT
GATCGGGGAAAACGCCTGGGGTAAGTCGAGCCTGCTGGATGCCTTGACCCTGTGCCTGTCGCCGGAGCGCGATCTGTACC
GTTTTCAGCCCCATGATTTCTACTTTCCCCCCGGTGATGAAACGGCCAGAGAGCACCACCTGCAGATTGTGTTTACCTTT
TGCGAAATCGAGCGGGGTCACGCCCGGGCCCGCCGTTATTACCGGCTGTCGCCTCTGTGGCAGGAGAGCGGCGATCGTCT
GCAGCGTATCTATTTCCGCCAGGAGGGCGAGCTGAGCGACGACAATACGGTCTGCACCTGGCGCTCTTTTCTCAACGAGC
AGGGGGAATCACTCTCCCTGCATCACGTCGATCTGCTGGCGCGCGAGCTGATCCGCCTGCATCCGGTGCTGCGCCTGCGG
GATGCCCGCTTTATTCGTCGTCTGCACCCCAGCGTGCTGGCCGCCCGCCATCTGCCTGATCAGGCACAGGTAGCACAGCA
GCTGGATGATCTCACCCGTGAACTGGTGTGTAACCCGCAGAAGCTGAGCAACGGTGAGCTGCGCGCTGGCTTGGGCGCCA
TGCAGCAGCTGCTGGAGCACTATTTTTCCACCAACGGTGACGAGACGGCGGTTGGCGCCCGACGCCGCCACCGCAATGAG
ATTATCCACGGCCGTCAGGCATGGCGTTCTCTGGAGAATATCAATCAGATGATCGCTGCCTCGGGCAGCCCGCAATATGC
GTCTGATCCTGCTGGGTCTGTTTTCAACGCTGCTGCAGGCCAAGGGGGCGGTGATCCTCGATCGCCATGCGCGCCCGCTG
CTGGTGATTGA

Upstream 100 bases:

>100_bases
GAAAGCCAGCACAAAATGGTGCTCGTAGCGGGGGCATTCCTTGACCCGCCAAGGCTTTGCCCGCATCCTCATAACAATGA
GGCGACGAGAGAGGGATGGC

Downstream 100 bases:

>100_bases
AGATCCGGAGACCCGTCTGCACCCGATCATGCTGTCGGTCGCCTGGGGGCTGTTAAACCAGCTGCCGCTGCAAAAGGTGA
CGACCACCAACTCCGGCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MYLERIEVVGFRGINRISLSLDDNTVLIGENAWGKSSLLDALTLCLSPERDLYRFQPHDFYFPPGDETAREHHLQIVFTF
CEIERGHARARRYYRLSPLWQESGDRLQRIYFRQEGELSDDNTVCTWRSFLNEQGESLSLHHVDLLARELIRLHPVLRLR
DARFIRRLHPSVLAARHLPDQAQVAQQLDDLTRELVCNPQKLSNGELRAGLGAMQQLLEHYFSTNGDETAVGARRRHRNE
IIHGRQAWRSLENINQMIAASGSPQYASDPAGSVFNAAAGQGGGDPRSPCAPAAGD

Sequences:

>Translated_296_residues
MYLERIEVVGFRGINRISLSLDDNTVLIGENAWGKSSLLDALTLCLSPERDLYRFQPHDFYFPPGDETAREHHLQIVFTF
CEIERGHARARRYYRLSPLWQESGDRLQRIYFRQEGELSDDNTVCTWRSFLNEQGESLSLHHVDLLARELIRLHPVLRLR
DARFIRRLHPSVLAARHLPDQAQVAQQLDDLTRELVCNPQKLSNGELRAGLGAMQQLLEHYFSTNGDETAVGARRRHRNE
IIHGRQAWRSLENINQMIAASGSPQYASDPAGSVFNAAAGQGGGDPRSPCAPAAGD
>Mature_296_residues
MYLERIEVVGFRGINRISLSLDDNTVLIGENAWGKSSLLDALTLCLSPERDLYRFQPHDFYFPPGDETAREHHLQIVFTF
CEIERGHARARRYYRLSPLWQESGDRLQRIYFRQEGELSDDNTVCTWRSFLNEQGESLSLHHVDLLARELIRLHPVLRLR
DARFIRRLHPSVLAARHLPDQAQVAQQLDDLTRELVCNPQKLSNGELRAGLGAMQQLLEHYFSTNGDETAVGARRRHRNE
IIHGRQAWRSLENINQMIAASGSPQYASDPAGSVFNAAAGQGGGDPRSPCAPAAGD

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=268, Percent_Identity=52.9850746268657, Blast_Score=237, Evalue=6e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 33547; Mature: 33547

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLERIEVVGFRGINRISLSLDDNTVLIGENAWGKSSLLDALTLCLSPERDLYRFQPHDF
CCHHHEEEEECCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCHHEEECCCCC
YFPPGDETAREHHLQIVFTFCEIERGHARARRYYRLSPLWQESGDRLQRIYFRQEGELSD
CCCCCCCHHHHHHHEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
DNTVCTWRSFLNEQGESLSLHHVDLLARELIRLHPVLRLRDARFIRRLHPSVLAARHLPD
CCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QAQVAQQLDDLTRELVCNPQKLSNGELRAGLGAMQQLLEHYFSTNGDETAVGARRRHRNE
HHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
IIHGRQAWRSLENINQMIAASGSPQYASDPAGSVFNAAAGQGGGDPRSPCAPAAGD
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYLERIEVVGFRGINRISLSLDDNTVLIGENAWGKSSLLDALTLCLSPERDLYRFQPHDF
CCHHHEEEEECCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCHHEEECCCCC
YFPPGDETAREHHLQIVFTFCEIERGHARARRYYRLSPLWQESGDRLQRIYFRQEGELSD
CCCCCCCHHHHHHHEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
DNTVCTWRSFLNEQGESLSLHHVDLLARELIRLHPVLRLRDARFIRRLHPSVLAARHLPD
CCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QAQVAQQLDDLTRELVCNPQKLSNGELRAGLGAMQQLLEHYFSTNGDETAVGARRRHRNE
HHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
IIHGRQAWRSLENINQMIAASGSPQYASDPAGSVFNAAAGQGGGDPRSPCAPAAGD
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]