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The map label for this gene is ybjD [H]

Identifier: 238920386

GI number: 238920386

Start: 2391984

End: 2392772

Strand: Reverse

Name: ybjD [H]

Synonym: NT01EI_2496

Alternate gene names: 238920386

Gene position: 2392772-2391984 (Counterclockwise)

Preceding gene: 238920387

Following gene: 238920385

Centisome position: 62.76

GC content: 63.37

Gene sequence:

>789_bases
GTGATTGAAGATCCGGAGACCCGTCTGCACCCGATCATGCTGTCGGTCGCCTGGGGGCTGTTAAACCAGCTGCCGCTGCA
AAAGGTGACGACCACCAACTCCGGCGATCTGCTGGCGCTGATGCCGGTAGAACGGGTGTGCCGCCTGGTACGTCAGTCAG
GGCGGGTGGCGGCGTACCGTATCGGGCCTCGGGGTATGACGCCGGAAGAGGGGCGGCGGATCGCCTTTCATATTCGCTTT
AACCGCGCCTCGTCGCTGTTCGCCCGCTGTTGGCTGCTGGTTGAGGGGGAGACGGAGGTGTGGCTGTTGAGCGAGCTGGC
GCGTCAGTGCGGTTACCGCTTCGATACCGAAGGCATCAAGGTGATCGAGTTTGCCCAGTGTGGCTTGCGCCCGCTGATTA
AGTTCGCCCGCCGAATGGGGATCGCCTGGCATGTCCTGGTCGATGGCGACGAGGCCGGGCGTAAATATGCCGCGACGGTG
CGCGGCCTGCTGGAGGGGGGGCAGGAGAGCGAGCGCGATCGCCTGACGGTGCTGCCGGCGCCAGATATGGAGCACTTTAT
GTATCATGAGGGTTTTGCCGATGTGTACCACCACGTGGCCGGGATCCCGGCGTCGGCGCCGATGCCGATACGTAAGGTGA
TCACCAAGGCTATCCACCACGCTTCCAAGCCCGATCTGGCGATCATGGTTGCGGCGCGGGCAGAGGAGGCCGGCGTGAGT
CAGGTGCCTTTTCTGCTAAAGAATATGTTTTCGCGGGTGCTATGGCTGGCGCGCGGCAAGGCCGACTAG

Upstream 100 bases:

>100_bases
GGCAGCCCGCAATATGCGTCTGATCCTGCTGGGTCTGTTTTCAACGCTGCTGCAGGCCAAGGGGGCGGTGATCCTCGATC
GCCATGCGCGCCCGCTGCTG

Downstream 100 bases:

>100_bases
CGCCCACCTGGCGGTGGCCATGGATCTGTGGCTGATGCTGGCGGCCCTGTGTGGCCTGGCGCTCGGTATGCCCCTGCAGT
GCGCGATGCTGCGAATTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MIEDPETRLHPIMLSVAWGLLNQLPLQKVTTTNSGDLLALMPVERVCRLVRQSGRVAAYRIGPRGMTPEEGRRIAFHIRF
NRASSLFARCWLLVEGETEVWLLSELARQCGYRFDTEGIKVIEFAQCGLRPLIKFARRMGIAWHVLVDGDEAGRKYAATV
RGLLEGGQESERDRLTVLPAPDMEHFMYHEGFADVYHHVAGIPASAPMPIRKVITKAIHHASKPDLAIMVAARAEEAGVS
QVPFLLKNMFSRVLWLARGKAD

Sequences:

>Translated_262_residues
MIEDPETRLHPIMLSVAWGLLNQLPLQKVTTTNSGDLLALMPVERVCRLVRQSGRVAAYRIGPRGMTPEEGRRIAFHIRF
NRASSLFARCWLLVEGETEVWLLSELARQCGYRFDTEGIKVIEFAQCGLRPLIKFARRMGIAWHVLVDGDEAGRKYAATV
RGLLEGGQESERDRLTVLPAPDMEHFMYHEGFADVYHHVAGIPASAPMPIRKVITKAIHHASKPDLAIMVAARAEEAGVS
QVPFLLKNMFSRVLWLARGKAD
>Mature_262_residues
MIEDPETRLHPIMLSVAWGLLNQLPLQKVTTTNSGDLLALMPVERVCRLVRQSGRVAAYRIGPRGMTPEEGRRIAFHIRF
NRASSLFARCWLLVEGETEVWLLSELARQCGYRFDTEGIKVIEFAQCGLRPLIKFARRMGIAWHVLVDGDEAGRKYAATV
RGLLEGGQESERDRLTVLPAPDMEHFMYHEGFADVYHHVAGIPASAPMPIRKVITKAIHHASKPDLAIMVAARAEEAGVS
QVPFLLKNMFSRVLWLARGKAD

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=262, Percent_Identity=72.9007633587786, Blast_Score=405, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 29407; Mature: 29407

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEDPETRLHPIMLSVAWGLLNQLPLQKVTTTNSGDLLALMPVERVCRLVRQSGRVAAYR
CCCCCCHHHHHHHHHHHHHHHHHCCCHHEECCCCCCEEEECCHHHHHHHHHHCCCEEEEE
IGPRGMTPEEGRRIAFHIRFNRASSLFARCWLLVEGETEVWLLSELARQCGYRFDTEGIK
ECCCCCCCCCCCEEEEEEEECCHHHHHHHEEEEECCCCCCHHHHHHHHHCCCEECCCCCE
VIEFAQCGLRPLIKFARRMGIAWHVLVDGDEAGRKYAATVRGLLEGGQESERDRLTVLPA
EEHHHHCCHHHHHHHHHHCCCEEEEEECCCHHCHHHHHHHHHHHCCCCCCCCCCEEEECC
PDMEHFMYHEGFADVYHHVAGIPASAPMPIRKVITKAIHHASKPDLAIMVAARAEEAGVS
CCHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCH
QVPFLLKNMFSRVLWLARGKAD
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIEDPETRLHPIMLSVAWGLLNQLPLQKVTTTNSGDLLALMPVERVCRLVRQSGRVAAYR
CCCCCCHHHHHHHHHHHHHHHHHCCCHHEECCCCCCEEEECCHHHHHHHHHHCCCEEEEE
IGPRGMTPEEGRRIAFHIRFNRASSLFARCWLLVEGETEVWLLSELARQCGYRFDTEGIK
ECCCCCCCCCCCEEEEEEEECCHHHHHHHEEEEECCCCCCHHHHHHHHHCCCEECCCCCE
VIEFAQCGLRPLIKFARRMGIAWHVLVDGDEAGRKYAATVRGLLEGGQESERDRLTVLPA
EEHHHHCCHHHHHHHHHHCCCEEEEEECCCHHCHHHHHHHHHHHCCCCCCCCCCEEEECC
PDMEHFMYHEGFADVYHHVAGIPASAPMPIRKVITKAIHHASKPDLAIMVAARAEEAGVS
CCHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCH
QVPFLLKNMFSRVLWLARGKAD
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]