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The map label for this gene is clpS

Identifier: 238920382

GI number: 238920382

Start: 2389178

End: 2389498

Strand: Reverse

Name: clpS

Synonym: NT01EI_2492

Alternate gene names: 238920382

Gene position: 2389498-2389178 (Counterclockwise)

Preceding gene: 238920385

Following gene: 238920381

Centisome position: 62.68

GC content: 51.4

Gene sequence:

>321_bases
ATGGCGAACTTGAACGATTGGCTGAATCTTGAGCCGTTGGCTGAGGATCAGACACGCAGGGCGGTGAAGCCGCCGTCACT
GTATAGTGTCATACTGAATAACGATGACTATACGCCAATGGAGTTTGTCATCGAGGTGCTGCAGACGTTCTTCGCTTATG
ACATTGAACGTGCAACGCAGCTGATGCTGACTGTGCACTATAAAGGCAAGGCGGTATGTGGTGTGTTCACGGCAGAGGTT
GCGGAGACCAAGGTGGCATTGATTAATCGCTACGCACGTGACAATGAACATCCGCTGCTGTGCACGCTGGAAAAAGCCTG
A

Upstream 100 bases:

>100_bases
ATGCAGGGTTGGCTGGTAATCTTAGTGGTAGTTATGATATCGCTCAGTGATAGATGATTGACCGGCCCCGCCGGGAGCAG
AGAACAGGTAACAGATTGAA

Downstream 100 bases:

>100_bases
CCGGGTAACTGAAGGGAGGTGCCCATGCTCAACCAAGAACTGGAACTCAGTCTCAACATGGCGTTCGCCAGAGCGCGCGA
GCATCGACACGAGTTTATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MANLNDWLNLEPLAEDQTRRAVKPPSLYSVILNNDDYTPMEFVIEVLQTFFAYDIERATQLMLTVHYKGKAVCGVFTAEV
AETKVALINRYARDNEHPLLCTLEKA

Sequences:

>Translated_106_residues
MANLNDWLNLEPLAEDQTRRAVKPPSLYSVILNNDDYTPMEFVIEVLQTFFAYDIERATQLMLTVHYKGKAVCGVFTAEV
AETKVALINRYARDNEHPLLCTLEKA
>Mature_105_residues
ANLNDWLNLEPLAEDQTRRAVKPPSLYSVILNNDDYTPMEFVIEVLQTFFAYDIERATQLMLTVHYKGKAVCGVFTAEVA
ETKVALINRYARDNEHPLLCTLEKA

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=106, Percent_Identity=75.4716981132076, Blast_Score=181, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_EDWI9 (C5BEA1)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002933897.1
- GeneID:   7958830
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_2492
- OMA:   QVPRQDI
- ProtClustDB:   CLSK2813336
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12121; Mature: 11990

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLNDWLNLEPLAEDQTRRAVKPPSLYSVILNNDDYTPMEFVIEVLQTFFAYDIERATQ
CCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHE
LMLTVHYKGKAVCGVFTAEVAETKVALINRYARDNEHPLLCTLEKA
EEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure 
ANLNDWLNLEPLAEDQTRRAVKPPSLYSVILNNDDYTPMEFVIEVLQTFFAYDIERATQ
CCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHE
LMLTVHYKGKAVCGVFTAEVAETKVALINRYARDNEHPLLCTLEKA
EEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA