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The map label for this gene is ycfQ [H]

Identifier: 238920355

GI number: 238920355

Start: 2360283

End: 2360939

Strand: Reverse

Name: ycfQ [H]

Synonym: NT01EI_2465

Alternate gene names: 238920355

Gene position: 2360939-2360283 (Counterclockwise)

Preceding gene: 238920361

Following gene: 238920350

Centisome position: 61.93

GC content: 54.49

Gene sequence:

>657_bases
GTGTTTTTGTATTCATCGATACAAAAATCGATACGCAGGGTAAAAATGAAAGAGCACAGCAATAAAAAGGCAGGGCGGCC
ACAGAGGTTTGAGCGTGAGCAGGTATTGGATAAGCTGCTGCATCTTTTCTGGATGCAGGGCTATGAGGGAACCTCTATCG
CCGAAATCGTGAAGTGTGCGGGGATTAACCCACCGACGCTGTATGCTTCATTTGGCACTAAGGAGCAGGTGTTTGCGCTG
GTGATGGAGCGTTATGTCTCGCAATACCTGAGCCAGGTGATCGCCAGCATCGAGATGCCGGGGCTGTCGGTTCCGGCCCG
GCTGGAGCTGTTTTTAACCCGCTTTGTCGAGGTGATCACCCAGCCTGGCTATCCGCGCGGCTGCATGCTGCTGTTTGAGT
TGTTCACCTACCACAAAAAGCCTCCGGCGGTCTTTACCGGTCTGTATAGTGCCGGGCTTGCCTTTTTCAACGAATTCTGC
ATGATGGTGGCGCAGGGGATTGAACACGGTGAGATCCATGGCGCGGGTACGCCACAGGAGACGGCGACGCTGATCCTGGC
CTTCGAAAAGGGGCTGGCCATGCAGGCTAAGGCGGGGAGCGATCGCGATATGCTGCTGCATATTAGCCGCCAGTTTGTGC
AGATGCTGACGCATTAA

Upstream 100 bases:

>100_bases
AGATAGCCGCGCCGTCCGCTGGATTTGCATGAATTCATAATTCCACCTTTTTGTAATGTTCGATACAATATAATATTGTG
GTATTGGAAAGTTGAGTCAA

Downstream 100 bases:

>100_bases
GCAGGCTATCGGGTCAGAGAGAGACGCGGCGCCGTCGGCGTCGCGCCGGGAGTGTACCAGGCTTAATAGATAACCTTGTG
ACCATACTCGGTCAGAATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MFLYSSIQKSIRRVKMKEHSNKKAGRPQRFEREQVLDKLLHLFWMQGYEGTSIAEIVKCAGINPPTLYASFGTKEQVFAL
VMERYVSQYLSQVIASIEMPGLSVPARLELFLTRFVEVITQPGYPRGCMLLFELFTYHKKPPAVFTGLYSAGLAFFNEFC
MMVAQGIEHGEIHGAGTPQETATLILAFEKGLAMQAKAGSDRDMLLHISRQFVQMLTH

Sequences:

>Translated_218_residues
MFLYSSIQKSIRRVKMKEHSNKKAGRPQRFEREQVLDKLLHLFWMQGYEGTSIAEIVKCAGINPPTLYASFGTKEQVFAL
VMERYVSQYLSQVIASIEMPGLSVPARLELFLTRFVEVITQPGYPRGCMLLFELFTYHKKPPAVFTGLYSAGLAFFNEFC
MMVAQGIEHGEIHGAGTPQETATLILAFEKGLAMQAKAGSDRDMLLHISRQFVQMLTH
>Mature_218_residues
MFLYSSIQKSIRRVKMKEHSNKKAGRPQRFEREQVLDKLLHLFWMQGYEGTSIAEIVKCAGINPPTLYASFGTKEQVFAL
VMERYVSQYLSQVIASIEMPGLSVPARLELFLTRFVEVITQPGYPRGCMLLFELFTYHKKPPAVFTGLYSAGLAFFNEFC
MMVAQGIEHGEIHGAGTPQETATLILAFEKGLAMQAKAGSDRDMLLHISRQFVQMLTH

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=188, Percent_Identity=28.1914893617021, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI87082397, Length=128, Percent_Identity=32.03125, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24691; Mature: 24691

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLYSSIQKSIRRVKMKEHSNKKAGRPQRFEREQVLDKLLHLFWMQGYEGTSIAEIVKCA
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
GINPPTLYASFGTKEQVFALVMERYVSQYLSQVIASIEMPGLSVPARLELFLTRFVEVIT
CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
QPGYPRGCMLLFELFTYHKKPPAVFTGLYSAGLAFFNEFCMMVAQGIEHGEIHGAGTPQE
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
TATLILAFEKGLAMQAKAGSDRDMLLHISRQFVQMLTH
HHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFLYSSIQKSIRRVKMKEHSNKKAGRPQRFEREQVLDKLLHLFWMQGYEGTSIAEIVKCA
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
GINPPTLYASFGTKEQVFALVMERYVSQYLSQVIASIEMPGLSVPARLELFLTRFVEVIT
CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
QPGYPRGCMLLFELFTYHKKPPAVFTGLYSAGLAFFNEFCMMVAQGIEHGEIHGAGTPQE
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
TATLILAFEKGLAMQAKAGSDRDMLLHISRQFVQMLTH
HHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]