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The map label for this gene is ycaD [C]

Identifier: 238920361

GI number: 238920361

Start: 2363860

End: 2365005

Strand: Reverse

Name: ycaD [C]

Synonym: NT01EI_2471

Alternate gene names: 238920361

Gene position: 2365005-2363860 (Counterclockwise)

Preceding gene: 238920362

Following gene: 238920355

Centisome position: 62.04

GC content: 63.18

Gene sequence:

>1146_bases
ATGCTCTCGCTCTCTCGCCCGGTGCTGCTGCTGCTCTGCGGGCTACTACTGCTGACGGTTGCCATGGCCTTACTCAATAC
GCTGGTGCCGCTGTGGCTGGATCAGCAGCACCTGGTGACGTGGCAGGTCGGGGTGGTGGGCTCAGCCTATTTTCTTGGCA
ATCTGGTCGGGACGCTGGTCACCGGGCGCGTGATCCTGTGGCGTGGCTTCAATCAGAGCTACTACTACGCCTGCCTGCTG
TTTGCCGCCTCGACGGCGGCGCTGGGGATCGCCAGTGAATTCTGGGGTTGGCTCCTGTGGCGTTTCCTGGCCGGGATCGG
CTGTGCCATGATCTGGGTGATCGTCGAGAGTGCCCTGCTGCGCAGCGGTAGCAACGCTAACCGGGGGCAGCTGCTGGCGG
CCTATATGACTATCTACTATCTGGGCACCGTACTGGGGCAGCTGGCGCTGGGGGTGATCTCGACGGCGCTGCTGAGGGTG
ATCCCCGGGACGACGGCACTGATGGTGGTGGCGATGCTGCCGCTGTGTTTTGCCCGTATCGAGCAGCCTCAGCCGCGGCA
TACGGTGCTGGCGATCTGGCCGCTTCTACGCCGTCGCAGCGTCTGGCTGGGGGTGAGCGGCTGCGTTGTTTCCGGGGCGA
TACTGGGCACCCTGTATGGGCTACTGCCGCTGTATCTGAGCCATCAGGGGATCAGCGATGCCCGCATTGGCTATTGGATG
GCGCTGCTGGTCAGCGCGGGGATCCTCGGCCAGTGGCCGGTAGGGCGCCTGGCCGATCGCTATGGCCGCCTGCGGGTGCT
GCGGGCACAGGTTATGCTGCTGATCCTCAGCTGTCTGGTAATGCTGTCGACGCCACAGGGGGCGATGGCTGCGCTGGTTA
TTTTGGGCGGGGCCGGGTTTACTCTTTACCCTGTCGCCATGTCGTGGGCGTGTGAGCGGGCCGATCGCCATGAGCTGGTG
GTGATGAATCAGGTGCTGCTGATAAGCTATACCCTGGGTAGCTTGGCCGGACCTACGCTGGTGGCGCTGTTGATGCAGCA
TTTCTCCGATCGCTGGATGTTTGTGATAATCGCTGTGATTGCGCTGTGCTATTGGCTGATGTTGTGGCGACGCCCCGAAG
GACACTCCGCGCTGCCGACGGCCTAA

Upstream 100 bases:

>100_bases
TCCGCTGGCTGACCGCTGCTGAGTAATTAACGAGCCATTGACATTTTTGTCACCGGTGGCATGATGCGCACACTTTGTCT
GTCTGTGCGGTCACTCTTCC

Downstream 100 bases:

>100_bases
AGCAAGACACCCTGCGCAGGGCTCAGGGTGTCTTTATGGTGCGGCATAGACCCACCCGCGTGGTGGGACAGGGTTCTGCT
GTCAGCGCAGCAGCGTGGCC

Product: MFS family transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MLSLSRPVLLLLCGLLLLTVAMALLNTLVPLWLDQQHLVTWQVGVVGSAYFLGNLVGTLVTGRVILWRGFNQSYYYACLL
FAASTAALGIASEFWGWLLWRFLAGIGCAMIWVIVESALLRSGSNANRGQLLAAYMTIYYLGTVLGQLALGVISTALLRV
IPGTTALMVVAMLPLCFARIEQPQPRHTVLAIWPLLRRRSVWLGVSGCVVSGAILGTLYGLLPLYLSHQGISDARIGYWM
ALLVSAGILGQWPVGRLADRYGRLRVLRAQVMLLILSCLVMLSTPQGAMAALVILGGAGFTLYPVAMSWACERADRHELV
VMNQVLLISYTLGSLAGPTLVALLMQHFSDRWMFVIIAVIALCYWLMLWRRPEGHSALPTA

Sequences:

>Translated_381_residues
MLSLSRPVLLLLCGLLLLTVAMALLNTLVPLWLDQQHLVTWQVGVVGSAYFLGNLVGTLVTGRVILWRGFNQSYYYACLL
FAASTAALGIASEFWGWLLWRFLAGIGCAMIWVIVESALLRSGSNANRGQLLAAYMTIYYLGTVLGQLALGVISTALLRV
IPGTTALMVVAMLPLCFARIEQPQPRHTVLAIWPLLRRRSVWLGVSGCVVSGAILGTLYGLLPLYLSHQGISDARIGYWM
ALLVSAGILGQWPVGRLADRYGRLRVLRAQVMLLILSCLVMLSTPQGAMAALVILGGAGFTLYPVAMSWACERADRHELV
VMNQVLLISYTLGSLAGPTLVALLMQHFSDRWMFVIIAVIALCYWLMLWRRPEGHSALPTA
>Mature_381_residues
MLSLSRPVLLLLCGLLLLTVAMALLNTLVPLWLDQQHLVTWQVGVVGSAYFLGNLVGTLVTGRVILWRGFNQSYYYACLL
FAASTAALGIASEFWGWLLWRFLAGIGCAMIWVIVESALLRSGSNANRGQLLAAYMTIYYLGTVLGQLALGVISTALLRV
IPGTTALMVVAMLPLCFARIEQPQPRHTVLAIWPLLRRRSVWLGVSGCVVSGAILGTLYGLLPLYLSHQGISDARIGYWM
ALLVSAGILGQWPVGRLADRYGRLRVLRAQVMLLILSCLVMLSTPQGAMAALVILGGAGFTLYPVAMSWACERADRHELV
VMNQVLLISYTLGSLAGPTLVALLMQHFSDRWMFVIIAVIALCYWLMLWRRPEGHSALPTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=383, Percent_Identity=59.7911227154047, Blast_Score=434, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41700; Mature: 41700

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLSRPVLLLLCGLLLLTVAMALLNTLVPLWLDQQHLVTWQVGVVGSAYFLGNLVGTLV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEHHHHHHHHHHHHHHHHHH
TGRVILWRGFNQSYYYACLLFAASTAALGIASEFWGWLLWRFLAGIGCAMIWVIVESALL
HCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSGSNANRGQLLAAYMTIYYLGTVLGQLALGVISTALLRVIPGTTALMVVAMLPLCFARI
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
EQPQPRHTVLAIWPLLRRRSVWLGVSGCVVSGAILGTLYGLLPLYLSHQGISDARIGYWM
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ALLVSAGILGQWPVGRLADRYGRLRVLRAQVMLLILSCLVMLSTPQGAMAALVILGGAGF
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
TLYPVAMSWACERADRHELVVMNQVLLISYTLGSLAGPTLVALLMQHFSDRWMFVIIAVI
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHH
ALCYWLMLWRRPEGHSALPTA
HHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLSLSRPVLLLLCGLLLLTVAMALLNTLVPLWLDQQHLVTWQVGVVGSAYFLGNLVGTLV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEHHHHHHHHHHHHHHHHHH
TGRVILWRGFNQSYYYACLLFAASTAALGIASEFWGWLLWRFLAGIGCAMIWVIVESALL
HCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSGSNANRGQLLAAYMTIYYLGTVLGQLALGVISTALLRVIPGTTALMVVAMLPLCFARI
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
EQPQPRHTVLAIWPLLRRRSVWLGVSGCVVSGAILGTLYGLLPLYLSHQGISDARIGYWM
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ALLVSAGILGQWPVGRLADRYGRLRVLRAQVMLLILSCLVMLSTPQGAMAALVILGGAGF
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
TLYPVAMSWACERADRHELVVMNQVLLISYTLGSLAGPTLVALLMQHFSDRWMFVIIAVI
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHH
ALCYWLMLWRRPEGHSALPTA
HHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]