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The map label for this gene is cspC [H]

Identifier: 238920340

GI number: 238920340

Start: 2339864

End: 2340073

Strand: Reverse

Name: cspC [H]

Synonym: NT01EI_2450

Alternate gene names: 238920340

Gene position: 2340073-2339864 (Counterclockwise)

Preceding gene: 238920341

Following gene: 238920339

Centisome position: 61.38

GC content: 52.86

Gene sequence:

>210_bases
ATGTCTAAGAAGACTGGTCAGGTAAAGTGGTTCAACGAAAGCAAAGGCTTCGGCTTTATCGAGCAGCATGACGGCGGTAA
AGATGTATTCGTACATTTCTCTGCCATCACCGGTGACGGTTTCAAAACGTTGGCTGAAGGCCAGCGTGTAGAGTACACCA
TTCAGGACAGCCCGCGCGGGCCGGCTGCCGCCAACGTTGTTGCGCTGTAA

Upstream 100 bases:

>100_bases
GTTCGAGAACCCTCTTCTTAGTGCCACCCATAAGTTAGTTTCTGCATTCGGCCTAACCCCCCCGATGGGGCAATTTCAGT
TAAAATTTAAGGTAATTCAC

Downstream 100 bases:

>100_bases
TTACATCGCATAACGCGTGACAATGCGCTTATCGTTAGCGCGGCGATGTGTTCGCCAGTGACGTGCATTGTCTATCAAGA
AAGCCCGCCTTTTACGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: CSP-C [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKKTGQVKWFNESKGFGFIEQHDGGKDVFVHFSAITGDGFKTLAEGQRVEYTIQDSPRGPAAANVVAL

Sequences:

>Translated_69_residues
MSKKTGQVKWFNESKGFGFIEQHDGGKDVFVHFSAITGDGFKTLAEGQRVEYTIQDSPRGPAAANVVAL
>Mature_68_residues
SKKTGQVKWFNESKGFGFIEQHDGGKDVFVHFSAITGDGFKTLAEGQRVEYTIQDSPRGPAAANVVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=73.9130434782609, Blast_Score=105, Evalue=5e-25,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=72.463768115942, Blast_Score=104, Evalue=1e-24,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=64.7058823529412, Blast_Score=92, Evalue=5e-21,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=64.1791044776119, Blast_Score=92, Evalue=8e-21,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=63.2352941176471, Blast_Score=92, Evalue=1e-20,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=62.1212121212121, Blast_Score=89, Evalue=4e-20,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=46.875, Blast_Score=70, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=46.031746031746, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7502; Mature: 7371

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKTGQVKWFNESKGFGFIEQHDGGKDVFVHFSAITGDGFKTLAEGQRVEYTIQDSPRG
CCCCCCCEEEEECCCCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCC
PAAANVVAL
CCCEEEEEC
>Mature Secondary Structure 
SKKTGQVKWFNESKGFGFIEQHDGGKDVFVHFSAITGDGFKTLAEGQRVEYTIQDSPRG
CCCCCCEEEEECCCCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCC
PAAANVVAL
CCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12384590; 12704152 [H]