Click here to switch to the map view.

The map label for this gene is ycbB [H]

Identifier: 238920326

GI number: 238920326

Start: 2323350

End: 2324984

Strand: Reverse

Name: ycbB [H]

Synonym: NT01EI_2436

Alternate gene names: 238920326

Gene position: 2324984-2323350 (Counterclockwise)

Preceding gene: 238920327

Following gene: 238920325

Centisome position: 60.99

GC content: 63.49

Gene sequence:

>1635_bases
ATGCTGAGCGCTAAATTCGGTTTTCGCCGGCGTATGGCCGGCACGCTGCTGGCGGTAACGCTGGCGCCTTGGGGTACACC
GGCGCTGGCACAAACGGCGCCGCTGCATGCGGAGGCAGCGCCCGCCGTGTCGGTGCTGCAGGCGCAGCTGCCGCCGGGGA
TCACGCTACGCTATGGCCATGAGCTGGCGGTGATGTACGCGGCCCACAGTGAGCAGCCGATGTGGCAGGACAGCGAGGTG
GTGCGGGACTTCCAGCAGCAGCTGGCGGAGCTGGCGCTGTCCGGCGTACAGCCGCAGTTTGCCCGCTGGGCCGATGCGCT
GACGGATCCCCGCCTTCACGGCATGGCGCGGGATATCCTGTTGTCTGACGCCATGATGGGCTACCTGCAGTATGTGGCCG
GCGTGACGGCCAACGGTGATGCCTGGCTGTACGGTAATAAGAGCTATACGCTCGCAGCCCCGCCCGTCGGGCTGGTCGAT
AACTGGCAGCGGGCGCTGCGCCAGGGGAAGCTGACGGTCTTTATCCGTTCGCTGGCGCCTTCTAACCCCCAGTATTTGGC
GATGCGCTCGGCGTTGGAGAGGCTGTTGGCTGATACGACGCCCTGGCCGCAGATGCCCGGTGGGCCGACGCTGCGCCCGG
GCGACAGCAGCCCAGCTGTCGCACCGCTGCGCGAGATACTGCTGCGCAGCGGCGCACTGCCGGCGACAGATGAGGGTGAC
GGCAATGTCTATACGCCGGCGCTGGTGGCGGCGGTGAAGCGTTTTCAGAGCGGCCAGGGCCTGACGCCGGATGGGGTGAT
CGGGCCGCGCACCTATGCCTGGCTGAACGTCACGCCGTCGATGCGAGCCTCTCTGCTGGCGCTGAATATTCAGCGCCTGC
GTCTGTTGCCCGCTTCGGTGTACACCGGGATCATGGTAAATATCCCAAATTACTCAATGACTTACTTCCGAGAAGGTAAG
GATGTGCTCTCTTCCCGGGTGATCGTCGGGCGTCCGGCGCGTAAGACGCCGCTGATGAACAGTGAGCTGAACAACGTGGT
GGTCAATCCGCCGTGGAATGTGCCGACGAAGCTGGTACGTGAGGATATCGTCCCCAAGGCCATGCGCGATCCCGGCTATT
TTGAGCGCCACGGTTATACGCTGCTCTCCGGCTGGAGCGGTGATGTCCAGGTGATAAATCCCTATATGCTCGACTGGAGC
AGCGTGTCGGCGCGCAACTTCCCTTATCGGGTACGCCAGGCGCCGGGGGCGGGCAACTCGCTGGGGCGCTTCAAATTTAA
TATGCCGAGCCAGGACGCCATCTACCTGCACGATACACCGAACCATGCGCTGTTCAATCAGGATATCCGCGCGCTCAGCT
CCGGCTGCGTCCGCATCAATAAGGCATCGACGCTGGCGGATATGCTGCTGGCTGACGCCGGGTGGAGCCCTGAGCGGGTT
GCCTCCGCACTGCAGGCAGGCAATACGCAGTATGTCCCTATCCGGCAGCGCATTCCGGTGCGGCTCTATTATCAGACCGT
CTGGGTCAGCGACGGTGGAGAGCCCCAGTTCCGCACAGATATTTACAATTATGATCAGCTGGCCCGCAACGGTAGCCGCA
GCGTGGCGCAGGCGCGTCAGCTTTTCCATCTGTAG

Upstream 100 bases:

>100_bases
GCTTGTTACCGTAGCGAGGCCGCCAATCGGCGGTTTATTCTGTATAATTTGCATTAGGTGCCCGACAGTATCGCTGTGGG
CGAAGAGGGAGCAAGGAGTC

Downstream 100 bases:

>100_bases
CGGGCGGTTATCCCATCGTGCGGCGGTCAGCGGCACCAGTGGTGGCAGGGCAATTTTTGTAATGGTCCGCGCCGGGGGGC
GCAGGGCGGGTTGACGTCGC

Product: peptidoglycan-binding domain 1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MLSAKFGFRRRMAGTLLAVTLAPWGTPALAQTAPLHAEAAPAVSVLQAQLPPGITLRYGHELAVMYAAHSEQPMWQDSEV
VRDFQQQLAELALSGVQPQFARWADALTDPRLHGMARDILLSDAMMGYLQYVAGVTANGDAWLYGNKSYTLAAPPVGLVD
NWQRALRQGKLTVFIRSLAPSNPQYLAMRSALERLLADTTPWPQMPGGPTLRPGDSSPAVAPLREILLRSGALPATDEGD
GNVYTPALVAAVKRFQSGQGLTPDGVIGPRTYAWLNVTPSMRASLLALNIQRLRLLPASVYTGIMVNIPNYSMTYFREGK
DVLSSRVIVGRPARKTPLMNSELNNVVVNPPWNVPTKLVREDIVPKAMRDPGYFERHGYTLLSGWSGDVQVINPYMLDWS
SVSARNFPYRVRQAPGAGNSLGRFKFNMPSQDAIYLHDTPNHALFNQDIRALSSGCVRINKASTLADMLLADAGWSPERV
ASALQAGNTQYVPIRQRIPVRLYYQTVWVSDGGEPQFRTDIYNYDQLARNGSRSVAQARQLFHL

Sequences:

>Translated_544_residues
MLSAKFGFRRRMAGTLLAVTLAPWGTPALAQTAPLHAEAAPAVSVLQAQLPPGITLRYGHELAVMYAAHSEQPMWQDSEV
VRDFQQQLAELALSGVQPQFARWADALTDPRLHGMARDILLSDAMMGYLQYVAGVTANGDAWLYGNKSYTLAAPPVGLVD
NWQRALRQGKLTVFIRSLAPSNPQYLAMRSALERLLADTTPWPQMPGGPTLRPGDSSPAVAPLREILLRSGALPATDEGD
GNVYTPALVAAVKRFQSGQGLTPDGVIGPRTYAWLNVTPSMRASLLALNIQRLRLLPASVYTGIMVNIPNYSMTYFREGK
DVLSSRVIVGRPARKTPLMNSELNNVVVNPPWNVPTKLVREDIVPKAMRDPGYFERHGYTLLSGWSGDVQVINPYMLDWS
SVSARNFPYRVRQAPGAGNSLGRFKFNMPSQDAIYLHDTPNHALFNQDIRALSSGCVRINKASTLADMLLADAGWSPERV
ASALQAGNTQYVPIRQRIPVRLYYQTVWVSDGGEPQFRTDIYNYDQLARNGSRSVAQARQLFHL
>Mature_544_residues
MLSAKFGFRRRMAGTLLAVTLAPWGTPALAQTAPLHAEAAPAVSVLQAQLPPGITLRYGHELAVMYAAHSEQPMWQDSEV
VRDFQQQLAELALSGVQPQFARWADALTDPRLHGMARDILLSDAMMGYLQYVAGVTANGDAWLYGNKSYTLAAPPVGLVD
NWQRALRQGKLTVFIRSLAPSNPQYLAMRSALERLLADTTPWPQMPGGPTLRPGDSSPAVAPLREILLRSGALPATDEGD
GNVYTPALVAAVKRFQSGQGLTPDGVIGPRTYAWLNVTPSMRASLLALNIQRLRLLPASVYTGIMVNIPNYSMTYFREGK
DVLSSRVIVGRPARKTPLMNSELNNVVVNPPWNVPTKLVREDIVPKAMRDPGYFERHGYTLLSGWSGDVQVINPYMLDWS
SVSARNFPYRVRQAPGAGNSLGRFKFNMPSQDAIYLHDTPNHALFNQDIRALSSGCVRINKASTLADMLLADAGWSPERV
ASALQAGNTQYVPIRQRIPVRLYYQTVWVSDGGEPQFRTDIYNYDQLARNGSRSVAQARQLFHL

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=561, Percent_Identity=52.7629233511586, Blast_Score=583, Evalue=1e-168,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 59951; Mature: 59951

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSAKFGFRRRMAGTLLAVTLAPWGTPALAQTAPLHAEAAPAVSVLQAQLPPGITLRYGH
CCCCCCCHHHHHHHEEEEEEECCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECC
ELAVMYAAHSEQPMWQDSEVVRDFQQQLAELALSGVQPQFARWADALTDPRLHGMARDIL
EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
LSDAMMGYLQYVAGVTANGDAWLYGNKSYTLAAPPVGLVDNWQRALRQGKLTVFIRSLAP
HHHHHHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCC
SNPQYLAMRSALERLLADTTPWPQMPGGPTLRPGDSSPAVAPLREILLRSGALPATDEGD
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
GNVYTPALVAAVKRFQSGQGLTPDGVIGPRTYAWLNVTPSMRASLLALNIQRLRLLPASV
CCEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
YTGIMVNIPNYSMTYFREGKDVLSSRVIVGRPARKTPLMNSELNNVVVNPPWNVPTKLVR
HCCEEEECCCCCCHHHHCCHHHHHCCEEECCCCCCCCCCCCCCCCEEECCCCCCHHHHHH
EDIVPKAMRDPGYFERHGYTLLSGWSGDVQVINPYMLDWSSVSARNFPYRVRQAPGAGNS
HHCCCHHHCCCCCCHHCCEEEEECCCCCEEECCCEEECCCCCCCCCCCEEEEECCCCCCC
LGRFKFNMPSQDAIYLHDTPNHALFNQDIRALSSGCVRINKASTLADMLLADAGWSPERV
CCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEECCHHHHHHHHHHCCCCCHHHH
ASALQAGNTQYVPIRQRIPVRLYYQTVWVSDGGEPQFRTDIYNYDQLARNGSRSVAQARQ
HHHHHCCCCEEEEHHHCCCEEEEEEEEEECCCCCCCHHHHHCCHHHHHCCCCHHHHHHHH
LFHL
HHCC
>Mature Secondary Structure
MLSAKFGFRRRMAGTLLAVTLAPWGTPALAQTAPLHAEAAPAVSVLQAQLPPGITLRYGH
CCCCCCCHHHHHHHEEEEEEECCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECC
ELAVMYAAHSEQPMWQDSEVVRDFQQQLAELALSGVQPQFARWADALTDPRLHGMARDIL
EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
LSDAMMGYLQYVAGVTANGDAWLYGNKSYTLAAPPVGLVDNWQRALRQGKLTVFIRSLAP
HHHHHHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCC
SNPQYLAMRSALERLLADTTPWPQMPGGPTLRPGDSSPAVAPLREILLRSGALPATDEGD
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
GNVYTPALVAAVKRFQSGQGLTPDGVIGPRTYAWLNVTPSMRASLLALNIQRLRLLPASV
CCEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
YTGIMVNIPNYSMTYFREGKDVLSSRVIVGRPARKTPLMNSELNNVVVNPPWNVPTKLVR
HCCEEEECCCCCCHHHHCCHHHHHCCEEECCCCCCCCCCCCCCCCEEECCCCCCHHHHHH
EDIVPKAMRDPGYFERHGYTLLSGWSGDVQVINPYMLDWSSVSARNFPYRVRQAPGAGNS
HHCCCHHHCCCCCCHHCCEEEEECCCCCEEECCCEEECCCCCCCCCCCEEEEECCCCCCC
LGRFKFNMPSQDAIYLHDTPNHALFNQDIRALSSGCVRINKASTLADMLLADAGWSPERV
CCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEECCHHHHHHHHHHCCCCCHHHH
ASALQAGNTQYVPIRQRIPVRLYYQTVWVSDGGEPQFRTDIYNYDQLARNGSRSVAQARQ
HHHHHCCCCEEEEHHHCCCEEEEEEEEEECCCCCCCHHHHHCCHHHHHCCCCHHHHHHHH
LFHL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]