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The map label for this gene is fliN [H]

Identifier: 238920319

GI number: 238920319

Start: 2318959

End: 2319372

Strand: Direct

Name: fliN [H]

Synonym: NT01EI_2429

Alternate gene names: 238920319

Gene position: 2318959-2319372 (Clockwise)

Preceding gene: 238920318

Following gene: 238920320

Centisome position: 60.83

GC content: 57.0

Gene sequence:

>414_bases
ATGAGTGACGCCAACAAGCCGTCAGCTGACGCTCAGGATGACGCCGCCGACCTGTGGGCGGAAGCAATGGGAGAACAACA
GACCGCCGCTCAGAATAACGGCGATATTTTTCAAAATCTGGACGAAACGCCGACGCTGAGCGTCGGCAGTGGTCAGGATA
TCGATCTGATCATGGATATCCCGGTCAAGCTGACCGTGGAGCTGGGTCGTACCAAGATGACCATCAAGGAGCTGCTGCGT
CTGTCACAAGGATCCGTGGTGGCACTGGATGGCCTGGCCGGAGAGCCGCTGGATGTGCTGATCAACGGCTATCTGATAGC
CCAGGGTGAGGTGGTGGTGGTCAACGATAAATTCGGCGTCCGCATTACCGATATTATCACCCCGTCAGAACGCATGCGTC
GTCTGAGCCGCTGA

Upstream 100 bases:

>100_bases
GTGTTAACCTGCCAATATGGCTGCTATCACGGCCAGTATGCACTGCGCGTAGAAAAAATGATTAACCCTATTTTAGATGC
GACTTCGCGAGGAAATTCCG

Downstream 100 bases:

>100_bases
TATGTCAAGCGTCGTCGCGGCGATCCCCGCCCCCCCCGCTCTGCCAACAGAAAGCGTGCTAACCCAGGTGGGCGGTACGC
TGGGCGGCATTCTGCTGCTG

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSDANKPSADAQDDAADLWAEAMGEQQTAAQNNGDIFQNLDETPTLSVGSGQDIDLIMDIPVKLTVELGRTKMTIKELLR
LSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVNDKFGVRITDIITPSERMRRLSR

Sequences:

>Translated_137_residues
MSDANKPSADAQDDAADLWAEAMGEQQTAAQNNGDIFQNLDETPTLSVGSGQDIDLIMDIPVKLTVELGRTKMTIKELLR
LSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVNDKFGVRITDIITPSERMRRLSR
>Mature_136_residues
SDANKPSADAQDDAADLWAEAMGEQQTAAQNNGDIFQNLDETPTLSVGSGQDIDLIMDIPVKLTVELGRTKMTIKELLRL
SQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVNDKFGVRITDIITPSERMRRLSR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=142, Percent_Identity=70.4225352112676, Blast_Score=186, Evalue=5e-49,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 14797; Mature: 14666

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDANKPSADAQDDAADLWAEAMGEQQTAAQNNGDIFQNLDETPTLSVGSGQDIDLIMDI
CCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCHHHHCCCCCCEEECCCCCCEEEEEEC
PVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVNDKFGV
CEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCHHEEEECEEEECCCEEEEECCCCE
RITDIITPSERMRRLSR
EEEEEECCHHHHHHHCC
>Mature Secondary Structure 
SDANKPSADAQDDAADLWAEAMGEQQTAAQNNGDIFQNLDETPTLSVGSGQDIDLIMDI
CCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCHHHHCCCCCCEEECCCCCCEEEEEEC
PVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVNDKFGV
CEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCHHEEEECEEEECCCEEEEECCCCE
RITDIITPSERMRRLSR
EEEEEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]