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The map label for this gene is ycfH [H]

Identifier: 238920253

GI number: 238920253

Start: 2264589

End: 2265377

Strand: Reverse

Name: ycfH [H]

Synonym: NT01EI_2362

Alternate gene names: 238920253

Gene position: 2265377-2264589 (Counterclockwise)

Preceding gene: 238920254

Following gene: 238920252

Centisome position: 59.42

GC content: 64.39

Gene sequence:

>789_bases
ATGTATCTAGTGGATTCGCACTGCCATCTTGATGGCTTGAACTATGAGACGCTGCACGACGGCGTCGACAGCGTGTTGGC
CGATGCCCGTGCGCGCGGCGTGGGCTTTGTGTTGGCGGTCGCGACGACGCTGCCGGGCTATCGCAGCATGCGTGAGCGGA
TCGGCGAGCGGCGCGATGTGGCATTCTCCTGCGGAGTCCATCCGCTGAATCTGGAGGAGGGCTATGACTACGGGGCGCTG
CGCAGCCTGGCGGCGCAGCCGGGCGTAGTGGCGCTGGGGGAGACCGGGCTCGACTACTACTATCAGCAGGATAATATCGT
CCTGCAGCAGGATTCGTTTCGCCAGCATATCCGTATCGGCCGCGCGCTGGGCAAACCGGTGATCGTGCATACCCGCGACG
CGCGGGATGATACGCTGGCGATCCTGCGCGAGGAGGGGGCGGAGGCGTGCGGCGGCGTGCTGCACTGCTTTACCGAGGAT
CGTGCGACGGCGGCGGCGCTGCTGGATCTCGGGTTTTATATCTCCTTCTCCGGCATCGTGACGTTCCGCACCGCGGACGC
CCTGCGTGAGGTGGCCCGCTATGTGCCGCTGGATCGCCTGCTGGTGGAGACCGACTCGCCCTATCTGGCGCCGGTGCCGC
ACCGCGGAAAAGAGAACCAGCCAGCCTACGTGCGTGATGTCGCTGAGTACCTGGCGGTGCTGAAGGGTGTCGATCCACGG
CAGCTGGCCGCACAGACCAGCGCCAATTTTAGCCGTTTGTTTGGAGTGACACTGCCAGAGGCGGATTAA

Upstream 100 bases:

>100_bases
GGGTAAACCGTGAATTGATGCTCATGCGCCAACTTTGCGTATGGGACGCACCCGCACCGGCCCACCCGTGAGCCGGTCAT
AGACAGACTGTAGGTTTCTT

Downstream 100 bases:

>100_bases
TATATTTCATCCTGTGTAAAAATGCCCGGCGATGGGCATTTTTAGCCGGATAAACGGCGGGTAAATTGGATAATAACGCA
ATAGAATGGTTAATGGAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MYLVDSHCHLDGLNYETLHDGVDSVLADARARGVGFVLAVATTLPGYRSMRERIGERRDVAFSCGVHPLNLEEGYDYGAL
RSLAAQPGVVALGETGLDYYYQQDNIVLQQDSFRQHIRIGRALGKPVIVHTRDARDDTLAILREEGAEACGGVLHCFTED
RATAAALLDLGFYISFSGIVTFRTADALREVARYVPLDRLLVETDSPYLAPVPHRGKENQPAYVRDVAEYLAVLKGVDPR
QLAAQTSANFSRLFGVTLPEAD

Sequences:

>Translated_262_residues
MYLVDSHCHLDGLNYETLHDGVDSVLADARARGVGFVLAVATTLPGYRSMRERIGERRDVAFSCGVHPLNLEEGYDYGAL
RSLAAQPGVVALGETGLDYYYQQDNIVLQQDSFRQHIRIGRALGKPVIVHTRDARDDTLAILREEGAEACGGVLHCFTED
RATAAALLDLGFYISFSGIVTFRTADALREVARYVPLDRLLVETDSPYLAPVPHRGKENQPAYVRDVAEYLAVLKGVDPR
QLAAQTSANFSRLFGVTLPEAD
>Mature_262_residues
MYLVDSHCHLDGLNYETLHDGVDSVLADARARGVGFVLAVATTLPGYRSMRERIGERRDVAFSCGVHPLNLEEGYDYGAL
RSLAAQPGVVALGETGLDYYYQQDNIVLQQDSFRQHIRIGRALGKPVIVHTRDARDDTLAILREEGAEACGGVLHCFTED
RATAAALLDLGFYISFSGIVTFRTADALREVARYVPLDRLLVETDSPYLAPVPHRGKENQPAYVRDVAEYLAVLKGVDPR
QLAAQTSANFSRLFGVTLPEAD

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=222, Percent_Identity=27.9279279279279, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI225903439, Length=192, Percent_Identity=27.0833333333333, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI14042943, Length=192, Percent_Identity=27.0833333333333, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=28.4644194756554, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=28.4644194756554, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI226061853, Length=273, Percent_Identity=28.2051282051282, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI226061614, Length=257, Percent_Identity=27.6264591439689, Blast_Score=76, Evalue=4e-14,
Organism=Escherichia coli, GI1787342, Length=256, Percent_Identity=73.828125, Blast_Score=379, Evalue=1e-106,
Organism=Escherichia coli, GI48994985, Length=243, Percent_Identity=34.156378600823, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=26.7441860465116, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17559024, Length=223, Percent_Identity=29.1479820627803, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71980746, Length=270, Percent_Identity=26.6666666666667, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24648690, Length=271, Percent_Identity=27.6752767527675, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221330018, Length=271, Percent_Identity=29.520295202952, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24586117, Length=271, Percent_Identity=29.520295202952, Blast_Score=77, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28811; Mature: 28811

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLVDSHCHLDGLNYETLHDGVDSVLADARARGVGFVLAVATTLPGYRSMRERIGERRDV
CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHEEHHHHHCCCHHHHHHHHCCCCCE
AFSCGVHPLNLEEGYDYGALRSLAAQPGVVALGETGLDYYYQQDNIVLQQDSFRQHIRIG
EEECCCCCCCHHCCCCHHHHHHHHCCCCEEEECCCCCCEEEECCCEEEECHHHHHHHHHH
RALGKPVIVHTRDARDDTLAILREEGAEACGGVLHCFTEDRATAAALLDLGFYISFSGIV
HHHCCCEEEEECCCCCHHHHHHHHHCHHHHHHHHEECCCCHHHHHHHHHHHHHEEECCEE
TFRTADALREVARYVPLDRLLVETDSPYLAPVPHRGKENQPAYVRDVAEYLAVLKGVDPR
EEHHHHHHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
QLAAQTSANFSRLFGVTLPEAD
HHHHHHCCCHHHHHEEECCCCC
>Mature Secondary Structure
MYLVDSHCHLDGLNYETLHDGVDSVLADARARGVGFVLAVATTLPGYRSMRERIGERRDV
CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHEEHHHHHCCCHHHHHHHHCCCCCE
AFSCGVHPLNLEEGYDYGALRSLAAQPGVVALGETGLDYYYQQDNIVLQQDSFRQHIRIG
EEECCCCCCCHHCCCCHHHHHHHHCCCCEEEECCCCCCEEEECCCEEEECHHHHHHHHHH
RALGKPVIVHTRDARDDTLAILREEGAEACGGVLHCFTEDRATAAALLDLGFYISFSGIV
HHHCCCEEEEECCCCCHHHHHHHHHCHHHHHHHHEECCCCHHHHHHHHHHHHHEEECCEE
TFRTADALREVARYVPLDRLLVETDSPYLAPVPHRGKENQPAYVRDVAEYLAVLKGVDPR
EEHHHHHHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
QLAAQTSANFSRLFGVTLPEAD
HHHHHHCCCHHHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]