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The map label for this gene is bssS [H]

Identifier: 238920231

GI number: 238920231

Start: 2239116

End: 2239355

Strand: Direct

Name: bssS [H]

Synonym: NT01EI_2340

Alternate gene names: 238920231

Gene position: 2239116-2239355 (Clockwise)

Preceding gene: 238920230

Following gene: 238920232

Centisome position: 58.73

GC content: 52.92

Gene sequence:

>240_bases
ATGAACGGCAAGGATGAAGTTATCCAGACGCATCCCGTTATTGGTTGGGATATCAGTACCGTAGACAGCTACGACGCTCT
CATGATCCGCCTTCACTATCTTTCATCACAGAATCAGCCACCGGAAGATGCCCGGGTTGACCGTACCCTGTGGTTAACCA
CCGACGTTGCCCGGCAACTGATCACCATACTGGAAGCCGGCATTGCCAAAAATCGAGTCCGGCGACTGTCAGCAGAGTGA

Upstream 100 bases:

>100_bases
GCTGGGTGGACCAGAGGTGCATATACTGAGAAAGCGCACAGTATGCGTTTATTGATCCTGGTGAGTAACTCATGTCAGTC
ACTACGCTTAAGGGGGTCTT

Downstream 100 bases:

>100_bases
CTACCTCAGGCACTAGGGATGGAGGGATTGGCACCGAGCCCCGTCCGAACCCACCCCATCGCCTACGGCGTTGGCCTATG
ATCCACACCGACACCGCCGC

Product: biofilm formation regulatory protein BssS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 79

Protein sequence:

>79_residues
MNGKDEVIQTHPVIGWDISTVDSYDALMIRLHYLSSQNQPPEDARVDRTLWLTTDVARQLITILEAGIAKNRVRRLSAE

Sequences:

>Translated_79_residues
MNGKDEVIQTHPVIGWDISTVDSYDALMIRLHYLSSQNQPPEDARVDRTLWLTTDVARQLITILEAGIAKNRVRRLSAE
>Mature_79_residues
MNGKDEVIQTHPVIGWDISTVDSYDALMIRLHYLSSQNQPPEDARVDRTLWLTTDVARQLITILEAGIAKNRVRRLSAE

Specific function: Represses biofilm formation in M9C glu and LB glu media but not in M9C and LB media. Seems to act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signaling pathways. C

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787299, Length=70, Percent_Identity=68.5714285714286, Blast_Score=103, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020273
- ProDom:   PD060858 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9003; Mature: 9003

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKDEVIQTHPVIGWDISTVDSYDALMIRLHYLSSQNQPPEDARVDRTLWLTTDVARQL
CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHH
ITILEAGIAKNRVRRLSAE
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNGKDEVIQTHPVIGWDISTVDSYDALMIRLHYLSSQNQPPEDARVDRTLWLTTDVARQL
CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHH
ITILEAGIAKNRVRRLSAE
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]