Click here to switch to the map view.

The map label for this gene is ycfJ [H]

Identifier: 238920224

GI number: 238920224

Start: 2234511

End: 2235059

Strand: Reverse

Name: ycfJ [H]

Synonym: NT01EI_2333

Alternate gene names: 238920224

Gene position: 2235059-2234511 (Counterclockwise)

Preceding gene: 238920225

Following gene: 238920222

Centisome position: 58.63

GC content: 67.4

Gene sequence:

>549_bases
ATGAATAAATCCATGCTGGCCGGTATCGGTATTGGGGTGGCTGCGGCGCTGAGCGTGGCCGCCGTGGCCGGGCTGAAGGT
GTTCGATGCGCCACCGCAGTATGCGCAGGTGCTGTCGGCGGTGCCGATCCATGACACCATCAAGACGCCGCGTAGGGTGT
GCCGCGATGTGGCGGTGACCCACCGCAGGGCGGTGCAGGACGAAAACCGCCTGGCGGGCTCGCTGCTGGGGGCCGTGGCC
GGCGGAGTGCTGGGTCACCAGGTCGGCGGCGGCCGGGGACGCGATGTGGCGACCGTGCTGGGCGCGCTGGGCGGTGGCTA
TGCCGGTAATCAGATCCAGGGGACCATGCAGCAGAATGACACCTACACCACCCGTGAGCAGCGTTGCACCACGGAGTATG
ATAAATCCCGTCGCCTGCTGGGGTACGATGTGACCTACCGCATCGGCGATCGGCGCGGCCGGGTGCGTATGGAGAGCGAT
CCCGGCCAGCAGATCCCGCTGGATGGCAACGGCCAGCTGATCATCGGGCAGGACGATCGCCGGGCCTGA

Upstream 100 bases:

>100_bases
CCGGCGCAGGCTGCGCACACTGACGGCGATTATTGCGAAATCATCGGCCCCGCCCGTGTCCATTTCCGCGCACGGTGGGC
CGTTAAGGGAGACGATCGGG

Downstream 100 bases:

>100_bases
GGGAAAGAGACGCGACGCGGCCAGAGGCCGGCGTCGCTCTCCTGGGCGGGTGTGCCGCCGCTAGATCCGATGTTCGGCGA
AGTCGGCCAGCAGACGCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MNKSMLAGIGIGVAAALSVAAVAGLKVFDAPPQYAQVLSAVPIHDTIKTPRRVCRDVAVTHRRAVQDENRLAGSLLGAVA
GGVLGHQVGGGRGRDVATVLGALGGGYAGNQIQGTMQQNDTYTTREQRCTTEYDKSRRLLGYDVTYRIGDRRGRVRMESD
PGQQIPLDGNGQLIIGQDDRRA

Sequences:

>Translated_182_residues
MNKSMLAGIGIGVAAALSVAAVAGLKVFDAPPQYAQVLSAVPIHDTIKTPRRVCRDVAVTHRRAVQDENRLAGSLLGAVA
GGVLGHQVGGGRGRDVATVLGALGGGYAGNQIQGTMQQNDTYTTREQRCTTEYDKSRRLLGYDVTYRIGDRRGRVRMESD
PGQQIPLDGNGQLIIGQDDRRA
>Mature_182_residues
MNKSMLAGIGIGVAAALSVAAVAGLKVFDAPPQYAQVLSAVPIHDTIKTPRRVCRDVAVTHRRAVQDENRLAGSLLGAVA
GGVLGHQVGGGRGRDVATVLGALGGGYAGNQIQGTMQQNDTYTTREQRCTTEYDKSRRLLGYDVTYRIGDRRGRVRMESD
PGQQIPLDGNGQLIIGQDDRRA

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=175, Percent_Identity=74.8571428571429, Blast_Score=257, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 19355; Mature: 19355

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSMLAGIGIGVAAALSVAAVAGLKVFDAPPQYAQVLSAVPIHDTIKTPRRVCRDVAVT
CCCCHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
HRRAVQDENRLAGSLLGAVAGGVLGHQVGGGRGRDVATVLGALGGGYAGNQIQGTMQQND
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
TYTTREQRCTTEYDKSRRLLGYDVTYRIGDRRGRVRMESDPGQQIPLDGNGQLIIGQDDR
CCCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCEEEECCCCC
RA
CC
>Mature Secondary Structure
MNKSMLAGIGIGVAAALSVAAVAGLKVFDAPPQYAQVLSAVPIHDTIKTPRRVCRDVAVT
CCCCHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
HRRAVQDENRLAGSLLGAVAGGVLGHQVGGGRGRDVATVLGALGGGYAGNQIQGTMQQND
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
TYTTREQRCTTEYDKSRRLLGYDVTYRIGDRRGRVRMESDPGQQIPLDGNGQLIIGQDDR
CCCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCEEEECCCCC
RA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]