| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920193
Identifier: 238920193
GI number: 238920193
Start: 2199032
End: 2199871
Strand: Reverse
Name: 238920193
Synonym: NT01EI_2302
Alternate gene names: NA
Gene position: 2199871-2199032 (Counterclockwise)
Preceding gene: 238920201
Following gene: 238920192
Centisome position: 57.7
GC content: 54.52
Gene sequence:
>840_bases ATGTCATCAGTTGATTGTCTGAGCTCAGGGGGGTATGCTAGAAAGGCAACGGCAAAATCCGTTGCCGGGATTTGCACCCC GGAATTGATCACAGCGCACGACCGCGCTTTAGCGGTTTTTTTGTGTGCGATGCACGGCTACATCCAGTTTATGGTGGGGC GTGCAGGGCAGTCTTCGGACTGGCCGGTTTCTGTGGTCACCGGTAGTGCAAACCCTGCACGTCTCACCACCCATGAGATT TGCACCTCTAGTGGTGAGTTGAAAAAACTGACCACAGAGGCTGCCATCATGGCTACGATCCCCGTCCCCGATCACCCTGA AATCACCGTTATCAACGGCCAGGTTGTTACTTCTTCTGTCGCTATTGCTGACTATTTCCTTAAGCGTCACGATGACGTTC TAAAGAAGATCCGCACTCTCGAATGTTCCCCCGGTTTTCATGCCCGCAATTTTGCGGTTTGCCGTAAAAACAGTGCGTTA CAGAACGGCAAACCTCAACCCTACTACCAAATCACCCGCGATGGTTTCGCGTTCCTGGCGATGGGCTTTACCGGCAAGCG GGCGGCCCGGTTCAAAGAAGCCTACATCACCGCCTTTAGCCAGATGGAAAGGGCCCTAAACGGCGCACCAGCGCTACCGG GCCCCGCACACAATGCGCACGCTGTATATCTCTACATGACAGAGATCCACCGGGTGTGGATGGCTCACCTGCGCCCCATG CTGGTGGCTTCCCAGTCTCCCTTGGCTCATAGCCTGCATGACTACATCAACGATGGTCTTTTCGCCTCAGCGCTTGTCGA TCGTTCGCTGAACAGCAACAAGGAGGTATGCCATGAGTAG
Upstream 100 bases:
>100_bases CTTTCAGCACTTCGCGCTTTTTGTAGATCAGTTGAGCTGGCACGGTGTTACCTCCTGTACTGATGTCAACCATAACATCA CCCTTTTGGTGATGTCAACG
Downstream 100 bases:
>100_bases CAAATTGCATGGTCTGGTATGGGAAGGGTGTGCCCATGCTGGTCTGATCCTTTCCCGCGTGGCTGTGATGGCACGGCTGG CGGATTACAGCAACGATGAG
Product: hypothetical protein
Products: NA
Alternate protein names: Rha Family Phage Regulatory Protein; Antirepressor; Bacteriophage Protein; Rha Protein; Antirepressor Phage; CI Repressor; Phage-Encoded Protein-Like Protein; Phage-Like Protein; Immunity Region Phage; Phage Associated Conserved Protein; Phage-Related Antirepressor; Prophage CI Repressor; Phage-Encoded Protein; Gene Complete Cds; Phage Antirepressor; Phage-Encoded Protein-Like; Phage Immunity Protein; Rha Phage Protein
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MSSVDCLSSGGYARKATAKSVAGICTPELITAHDRALAVFLCAMHGYIQFMVGRAGQSSDWPVSVVTGSANPARLTTHEI CTSSGELKKLTTEAAIMATIPVPDHPEITVINGQVVTSSVAIADYFLKRHDDVLKKIRTLECSPGFHARNFAVCRKNSAL QNGKPQPYYQITRDGFAFLAMGFTGKRAARFKEAYITAFSQMERALNGAPALPGPAHNAHAVYLYMTEIHRVWMAHLRPM LVASQSPLAHSLHDYINDGLFASALVDRSLNSNKEVCHE
Sequences:
>Translated_279_residues MSSVDCLSSGGYARKATAKSVAGICTPELITAHDRALAVFLCAMHGYIQFMVGRAGQSSDWPVSVVTGSANPARLTTHEI CTSSGELKKLTTEAAIMATIPVPDHPEITVINGQVVTSSVAIADYFLKRHDDVLKKIRTLECSPGFHARNFAVCRKNSAL QNGKPQPYYQITRDGFAFLAMGFTGKRAARFKEAYITAFSQMERALNGAPALPGPAHNAHAVYLYMTEIHRVWMAHLRPM LVASQSPLAHSLHDYINDGLFASALVDRSLNSNKEVCHE >Mature_278_residues SSVDCLSSGGYARKATAKSVAGICTPELITAHDRALAVFLCAMHGYIQFMVGRAGQSSDWPVSVVTGSANPARLTTHEIC TSSGELKKLTTEAAIMATIPVPDHPEITVINGQVVTSSVAIADYFLKRHDDVLKKIRTLECSPGFHARNFAVCRKNSALQ NGKPQPYYQITRDGFAFLAMGFTGKRAARFKEAYITAFSQMERALNGAPALPGPAHNAHAVYLYMTEIHRVWMAHLRPML VASQSPLAHSLHDYINDGLFASALVDRSLNSNKEVCHE
Specific function: Unknown
COG id: COG3646
COG function: function code S; Uncharacterized phage-encoded protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30377; Mature: 30246
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSVDCLSSGGYARKATAKSVAGICTPELITAHDRALAVFLCAMHGYIQFMVGRAGQSSD CCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC WPVSVVTGSANPARLTTHEICTSSGELKKLTTEAAIMATIPVPDHPEITVINGQVVTSSV CCEEEEECCCCCCEEHHHHHHCCCCCHHHHHHCEEEEEEECCCCCCCEEEECCEEEEHHH AIADYFLKRHDDVLKKIRTLECSPGFHARNFAVCRKNSALQNGKPQPYYQITRDGFAFLA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHCCCCCCCCEEEECCCEEEEE MGFTGKRAARFKEAYITAFSQMERALNGAPALPGPAHNAHAVYLYMTEIHRVWMAHLRPM ECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH LVASQSPLAHSLHDYINDGLFASALVDRSLNSNKEVCHE HHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHCC >Mature Secondary Structure SSVDCLSSGGYARKATAKSVAGICTPELITAHDRALAVFLCAMHGYIQFMVGRAGQSSD CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC WPVSVVTGSANPARLTTHEICTSSGELKKLTTEAAIMATIPVPDHPEITVINGQVVTSSV CCEEEEECCCCCCEEHHHHHHCCCCCHHHHHHCEEEEEEECCCCCCCEEEECCEEEEHHH AIADYFLKRHDDVLKKIRTLECSPGFHARNFAVCRKNSALQNGKPQPYYQITRDGFAFLA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHCCCCCCCCEEEECCCEEEEE MGFTGKRAARFKEAYITAFSQMERALNGAPALPGPAHNAHAVYLYMTEIHRVWMAHLRPM ECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH LVASQSPLAHSLHDYINDGLFASALVDRSLNSNKEVCHE HHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA