Click here to switch to the map view.

The map label for this gene is cyoD [H]

Identifier: 238920118

GI number: 238920118

Start: 2138163

End: 2138501

Strand: Reverse

Name: cyoD [H]

Synonym: NT01EI_2224

Alternate gene names: 238920118

Gene position: 2138501-2138163 (Counterclockwise)

Preceding gene: 238920119

Following gene: 238920117

Centisome position: 56.09

GC content: 51.92

Gene sequence:

>339_bases
ATGAGCCATTCATCCCATGAAACCTCTCACGGTGGCGCAGGCCATGGCGGAGTGAAGTCATACCTGATCGGCTTTATCTT
GTCGATCGTTCTGACGGTGATCCCGTTTGCGGTGGTGATGAGTGGTGGTGTTGCTCATTCCACCACCCTGGCAGTGGTCG
TCGGGATGGCGGTTATCCAGGTAATTGTTCACCTGGTTTGCTTCCTCCATATGAACACCTCATCGCAAGGGCGCTGGAAC
CTGGTGGCACTCCTGTTCACCGCTGTGATCATCGGTATCGTTGTTGTTGGCTCACTCTGGATTATGTACAACCTCAACAT
CAATATGATGGTCGATTAA

Upstream 100 bases:

>100_bases
CCAATAAAACCCGTCTGATGTGTCTGAGCCTGTTCTGGCACTTCCTGGATGTGATCTGGATCTGCCTATTTACAGCCGTC
TACCTACTGGGGGTTATGTC

Downstream 100 bases:

>100_bases
GGGCTGAGTGGCGCGTGATGATTAAGCAATACCTGCTAGTCACTAAACCAGGCATTATTTTCGGCAACCTCATTTCTGTT
GTTGGCGGATTTCTGCTCGC

Product: cytochrome o ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MSHSSHETSHGGAGHGGVKSYLIGFILSIVLTVIPFAVVMSGGVAHSTTLAVVVGMAVIQVIVHLVCFLHMNTSSQGRWN
LVALLFTAVIIGIVVVGSLWIMYNLNINMMVD

Sequences:

>Translated_112_residues
MSHSSHETSHGGAGHGGVKSYLIGFILSIVLTVIPFAVVMSGGVAHSTTLAVVVGMAVIQVIVHLVCFLHMNTSSQGRWN
LVALLFTAVIIGIVVVGSLWIMYNLNINMMVD
>Mature_111_residues
SHSSHETSHGGAGHGGVKSYLIGFILSIVLTVIPFAVVMSGGVAHSTTLAVVVGMAVIQVIVHLVCFLHMNTSSQGRWNL
VALLFTAVIIGIVVVGSLWIMYNLNINMMVD

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=106, Percent_Identity=61.3207547169811, Blast_Score=137, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 11859; Mature: 11728

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSSHETSHGGAGHGGVKSYLIGFILSIVLTVIPFAVVMSGGVAHSTTLAVVVGMAVIQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VIVHLVCFLHMNTSSQGRWNLVALLFTAVIIGIVVVGSLWIMYNLNINMMVD
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEC
>Mature Secondary Structure 
SHSSHETSHGGAGHGGVKSYLIGFILSIVLTVIPFAVVMSGGVAHSTTLAVVVGMAVIQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VIVHLVCFLHMNTSSQGRWNLVALLFTAVIIGIVVVGSLWIMYNLNINMMVD
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]