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The map label for this gene is ynjC [H]

Identifier: 238920007

GI number: 238920007

Start: 2030725

End: 2032347

Strand: Direct

Name: ynjC [H]

Synonym: NT01EI_2111

Alternate gene names: 238920007

Gene position: 2030725-2032347 (Clockwise)

Preceding gene: 238920006

Following gene: 238920008

Centisome position: 53.27

GC content: 66.97

Gene sequence:

>1623_bases
GTGTCACGACTGGCGCTGTTTCCCGCGCTGGTGCTGCTGTCCGGCATGCTGCCGCTGGCGGCGATGGTTCCGGCGACCCT
ATTACCGCTGAGCGAACAGGATGCGGGGCAGGCGCTGCAACAGCTGCTGCAGTGGCCCGCCCTGGAGCGCAGCCTGAGCC
TGTCGCTGTGGATAGCGCTGGGTGCCTCCGGCGGTGCCCTGCTGCTGGCACTGGCGCTGGCCGGACTCACCCTACAGCAG
CAACGTCAGCGCATGCTGGTGCCGGCGCTGCTGCTGGCGGCGCCCCACATTGCCCTGGCCACCGGTCTGCTGATGCTGCT
GGCGCCAACCGGCCTGCTGTGGCGCCTGATGGCACCGCTGTTTGAGTGGCAACAACCGCCGGACCTGCCGCTCCCCAACG
ACCCCTACGGCCTGAGCCTCTCGCTGCTGCTGCTGTTAAAAGAGACCCCCTTTTTCTATTTGCTTACCCTGAATCTGGCC
ACCCGCTGCGCGGCGCAGCAGCAGCTGCGCATCAGCGCCGCGCTGGGCTATTCCCCGATGCAGGGCTGGTGGCGCATCAT
GGTACCGCAGTTGCTGCCGGGGCTACGCCTGCCCATGTTCTGCGTCCTGGCCTTTGCCCTGTCGGCGCTGGATCTGGCGC
AGCTGCTCGGCCCACAGCGGCCACTGCTGTTTGCACAGCTGCTATGGCAGTGGATTGCCGATGGTGGGCAGACGGCGCTG
GCGGCCCTCGGGGCGCTGCTGCTGATGCTGTTAAACGCACTGGCGCTGCTGCTCTGGTACGGTATCGAACGCCTGTGGGT
CGCCGTTGCCCGCCGTCCTCCACGGTGGCGCATCGCCCACGGCGGGCTGGCAGCCTGCACCGCCTTTTGGCCCCTGGCGC
TGGCGCTGGCCGCCGCGGCCTACCTGATGCTGGCGCTGGTTTCGCTGGCCCAGCGCTGGCCCTTTGCGCAACGCTGGCCG
CAACAGTGGCGCTATGACAGCTGGCTGTACAGCGTCAGTGACTGGAGCGCCCCGCTGTGGCATACCCTGTGCATCGCGCT
GGCCGTCAACCTGCTGGCGCTGATCCTGGCGCTCGGCACGCTGGAGTGGTATACCCTGAGACGGCGGGTACCCGGCGCCT
GGCTGCTGATGCCACTGCTGCTGCCACAGATGGGACTGATCTTCGGTCTACAGTATTTCGCCGCCCGCAGCCAGCTGCTG
GGCAGCTACCCGCTGGTTATCTATGGCCAGCTGTTGTTCATCACCCCCTACTACCTGCTGACGCTGTCCGGCGCCTGGCT
GCGTTTCGATACGCGTCAGACCCGGGTGGCGCTGGCGTTGGGTAAGACGCCCTGGCAGGCCTTTTACCGGATTAAGCTGC
CGCAGATGCTACCGGCACTCCTGCTGGCGATAGCCTTTGGCGTCGCAGTCAGCGTCGGCATGTATCTGCCGACCCTGGGA
TTGGGCGCCGGGCGGCTGCCGACCCTGGCCACGGAAACCGTCGCCTATGCCAGTGGTATCGATCGTCGCCTGGCCGCCAT
CGGCGCCCTATGGCAAACCCTGCTGCCGCTGCCGGCCTTCCTGCTGGCGCTGTGGCTACCACTGCGGAGCGGTCGAGGAT
CTTCCCGTTATGACCACCCTTAA

Upstream 100 bases:

>100_bases
CCAGTAAGCGCGAAGACGCCCAAACCATCGAAGTTCACCCTAAGCTGGTTGAGCGCCGCTCCGTGGCCGACGGGCCGTTC
ATCGACTACCGCCGCTAAGC

Downstream 100 bases:

>100_bases
ACTCGAAAACTTCTACGTGACATTGTCACACAAACCGCTTCTCCCTCCTCTCTCCATAACGGTGTCACCCGGAGAGGTCC
TCACTCTGATGGGGCCGAGC

Product: inner membrane ABC transporter permease protein YnjC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 539

Protein sequence:

>540_residues
MSRLALFPALVLLSGMLPLAAMVPATLLPLSEQDAGQALQQLLQWPALERSLSLSLWIALGASGGALLLALALAGLTLQQ
QRQRMLVPALLLAAPHIALATGLLMLLAPTGLLWRLMAPLFEWQQPPDLPLPNDPYGLSLSLLLLLKETPFFYLLTLNLA
TRCAAQQQLRISAALGYSPMQGWWRIMVPQLLPGLRLPMFCVLAFALSALDLAQLLGPQRPLLFAQLLWQWIADGGQTAL
AALGALLLMLLNALALLLWYGIERLWVAVARRPPRWRIAHGGLAACTAFWPLALALAAAAYLMLALVSLAQRWPFAQRWP
QQWRYDSWLYSVSDWSAPLWHTLCIALAVNLLALILALGTLEWYTLRRRVPGAWLLMPLLLPQMGLIFGLQYFAARSQLL
GSYPLVIYGQLLFITPYYLLTLSGAWLRFDTRQTRVALALGKTPWQAFYRIKLPQMLPALLLAIAFGVAVSVGMYLPTLG
LGAGRLPTLATETVAYASGIDRRLAAIGALWQTLLPLPAFLLALWLPLRSGRGSSRYDHP

Sequences:

>Translated_540_residues
MSRLALFPALVLLSGMLPLAAMVPATLLPLSEQDAGQALQQLLQWPALERSLSLSLWIALGASGGALLLALALAGLTLQQ
QRQRMLVPALLLAAPHIALATGLLMLLAPTGLLWRLMAPLFEWQQPPDLPLPNDPYGLSLSLLLLLKETPFFYLLTLNLA
TRCAAQQQLRISAALGYSPMQGWWRIMVPQLLPGLRLPMFCVLAFALSALDLAQLLGPQRPLLFAQLLWQWIADGGQTAL
AALGALLLMLLNALALLLWYGIERLWVAVARRPPRWRIAHGGLAACTAFWPLALALAAAAYLMLALVSLAQRWPFAQRWP
QQWRYDSWLYSVSDWSAPLWHTLCIALAVNLLALILALGTLEWYTLRRRVPGAWLLMPLLLPQMGLIFGLQYFAARSQLL
GSYPLVIYGQLLFITPYYLLTLSGAWLRFDTRQTRVALALGKTPWQAFYRIKLPQMLPALLLAIAFGVAVSVGMYLPTLG
LGAGRLPTLATETVAYASGIDRRLAAIGALWQTLLPLPAFLLALWLPLRSGRGSSRYDHP
>Mature_539_residues
SRLALFPALVLLSGMLPLAAMVPATLLPLSEQDAGQALQQLLQWPALERSLSLSLWIALGASGGALLLALALAGLTLQQQ
RQRMLVPALLLAAPHIALATGLLMLLAPTGLLWRLMAPLFEWQQPPDLPLPNDPYGLSLSLLLLLKETPFFYLLTLNLAT
RCAAQQQLRISAALGYSPMQGWWRIMVPQLLPGLRLPMFCVLAFALSALDLAQLLGPQRPLLFAQLLWQWIADGGQTALA
ALGALLLMLLNALALLLWYGIERLWVAVARRPPRWRIAHGGLAACTAFWPLALALAAAAYLMLALVSLAQRWPFAQRWPQ
QWRYDSWLYSVSDWSAPLWHTLCIALAVNLLALILALGTLEWYTLRRRVPGAWLLMPLLLPQMGLIFGLQYFAARSQLLG
SYPLVIYGQLLFITPYYLLTLSGAWLRFDTRQTRVALALGKTPWQAFYRIKLPQMLPALLLAIAFGVAVSVGMYLPTLGL
GAGRLPTLATETVAYASGIDRRLAAIGALWQTLLPLPAFLLALWLPLRSGRGSSRYDHP

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=219, Percent_Identity=32.4200913242009, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 59534; Mature: 59403

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLALFPALVLLSGMLPLAAMVPATLLPLSEQDAGQALQQLLQWPALERSLSLSLWIAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHCEEEEEEE
GASGGALLLALALAGLTLQQQRQRMLVPALLLAAPHIALATGLLMLLAPTGLLWRLMAPL
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
FEWQQPPDLPLPNDPYGLSLSLLLLLKETPFFYLLTLNLATRCAAQQQLRISAALGYSPM
HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCHH
QGWWRIMVPQLLPGLRLPMFCVLAFALSALDLAQLLGPQRPLLFAQLLWQWIADGGQTAL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
AALGALLLMLLNALALLLWYGIERLWVAVARRPPRWRIAHGGLAACTAFWPLALALAAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHH
YLMLALVSLAQRWPFAQRWPQQWRYDSWLYSVSDWSAPLWHTLCIALAVNLLALILALGT
HHHHHHHHHHHHCCCHHHCHHHCCCHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LEWYTLRRRVPGAWLLMPLLLPQMGLIFGLQYFAARSQLLGSYPLVIYGQLLFITPYYLL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TLSGAWLRFDTRQTRVALALGKTPWQAFYRIKLPQMLPALLLAIAFGVAVSVGMYLPTLG
HHCCCCEEECCHHHHEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LGAGRLPTLATETVAYASGIDRRLAAIGALWQTLLPLPAFLLALWLPLRSGRGSSRYDHP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SRLALFPALVLLSGMLPLAAMVPATLLPLSEQDAGQALQQLLQWPALERSLSLSLWIAL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHCEEEEEEE
GASGGALLLALALAGLTLQQQRQRMLVPALLLAAPHIALATGLLMLLAPTGLLWRLMAPL
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
FEWQQPPDLPLPNDPYGLSLSLLLLLKETPFFYLLTLNLATRCAAQQQLRISAALGYSPM
HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCHH
QGWWRIMVPQLLPGLRLPMFCVLAFALSALDLAQLLGPQRPLLFAQLLWQWIADGGQTAL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
AALGALLLMLLNALALLLWYGIERLWVAVARRPPRWRIAHGGLAACTAFWPLALALAAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHH
YLMLALVSLAQRWPFAQRWPQQWRYDSWLYSVSDWSAPLWHTLCIALAVNLLALILALGT
HHHHHHHHHHHHCCCHHHCHHHCCCHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LEWYTLRRRVPGAWLLMPLLLPQMGLIFGLQYFAARSQLLGSYPLVIYGQLLFITPYYLL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TLSGAWLRFDTRQTRVALALGKTPWQAFYRIKLPQMLPALLLAIAFGVAVSVGMYLPTLG
HHCCCCEEECCHHHHEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LGAGRLPTLATETVAYASGIDRRLAAIGALWQTLLPLPAFLLALWLPLRSGRGSSRYDHP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]