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The map label for this gene is ydhO [H]

Identifier: 238920004

GI number: 238920004

Start: 2027489

End: 2028343

Strand: Direct

Name: ydhO [H]

Synonym: NT01EI_2108

Alternate gene names: 238920004

Gene position: 2027489-2028343 (Clockwise)

Preceding gene: 238920002

Following gene: 238920005

Centisome position: 53.18

GC content: 60.47

Gene sequence:

>855_bases
ATGCGTCTATTCGTTGCGCTCTTTGTATTGCTGTTTACCCAATGGTTTACCACCTCAGCGGCCGCCTCACCGGCACACAA
AGTCATCGCCGATCAGCGCAAAGCCACGGTTGCCCACAGCCAGAGCGATGAGCGTAAAAAACGCAGGGCAGACGACGGGG
CGCAGAAGCGCCGCAGCGCAACACCTCATCCCTCCTCCCGGGCAAAACGTGCGGCGCATACGACCCACCGCACGGTCACC
GTGCCACACCGCGCCGCCGCCGAACAGCGAACGAAAGCGCACCACCGCAGCGAAAAGTCCCTTAAGCATCGCGCCAGCGT
ACAAAGGGCGGTGCACCAGGGTAAAAAAGCCTACGGCCGCCCATCGGCCATTAAGTCGGCCCACCGCTCAGGCAGCCGCC
ATGAAGACGGTCAGCCAATCCACATGAACCCGCGGCACAAGAAGCGCTATCAGCACGCCAAACAGACGGCGATGAATAAG
CTGATGCGCCAGATAGGCAAACCCTATCACTGGGGCGGTACCTCTCCCCACACCGGCTTTGACTGCAGCGGCCTTATCTA
TTATGCCTACCAGGATCTGCTGAACATTAAAATACCGCGCACCGCTAACGAGATGTACCACCTGCGCGACGCCGCGCCGG
TCAAGCGCGCCGAGCTGCAGCGCGGCGATCTGGTATTCTTTCAAATCCACGGGCACGGCGCGGCCGATCACGTTGGCGTC
TATCTGGGCAACGGCAAATTTATTCAGTCTCCGCGCACCGGTGAGGAGATCCGCGTCAGCTATCTGGGCGATAACTACTG
GCAGGACCACTACCTGGGTGCCCGCCGTGTCATGACGCCGAAGACCATCCGCTAA

Upstream 100 bases:

>100_bases
GACGCGAATAGGTAAACATCAGTACTGTTATATTGAGTATATTTTAATTAATACTGTTGCTAAGTTTTTATTTTCGTTTT
TGGTTTGGAATCGACTGATC

Downstream 100 bases:

>100_bases
CGCCTCACTCGACACATTTCCCGGGGCGGTCACCCCGTGACCGCCCCGCTTCAACGCCCGCTTACCTCTGCACTTCTGCT
GTAAATTTCGCCACTCAGTC

Product: NlpC/P60 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MRLFVALFVLLFTQWFTTSAAASPAHKVIADQRKATVAHSQSDERKKRRADDGAQKRRSATPHPSSRAKRAAHTTHRTVT
VPHRAAAEQRTKAHHRSEKSLKHRASVQRAVHQGKKAYGRPSAIKSAHRSGSRHEDGQPIHMNPRHKKRYQHAKQTAMNK
LMRQIGKPYHWGGTSPHTGFDCSGLIYYAYQDLLNIKIPRTANEMYHLRDAAPVKRAELQRGDLVFFQIHGHGAADHVGV
YLGNGKFIQSPRTGEEIRVSYLGDNYWQDHYLGARRVMTPKTIR

Sequences:

>Translated_284_residues
MRLFVALFVLLFTQWFTTSAAASPAHKVIADQRKATVAHSQSDERKKRRADDGAQKRRSATPHPSSRAKRAAHTTHRTVT
VPHRAAAEQRTKAHHRSEKSLKHRASVQRAVHQGKKAYGRPSAIKSAHRSGSRHEDGQPIHMNPRHKKRYQHAKQTAMNK
LMRQIGKPYHWGGTSPHTGFDCSGLIYYAYQDLLNIKIPRTANEMYHLRDAAPVKRAELQRGDLVFFQIHGHGAADHVGV
YLGNGKFIQSPRTGEEIRVSYLGDNYWQDHYLGARRVMTPKTIR
>Mature_284_residues
MRLFVALFVLLFTQWFTTSAAASPAHKVIADQRKATVAHSQSDERKKRRADDGAQKRRSATPHPSSRAKRAAHTTHRTVT
VPHRAAAEQRTKAHHRSEKSLKHRASVQRAVHQGKKAYGRPSAIKSAHRSGSRHEDGQPIHMNPRHKKRYQHAKQTAMNK
LMRQIGKPYHWGGTSPHTGFDCSGLIYYAYQDLLNIKIPRTANEMYHLRDAAPVKRAELQRGDLVFFQIHGHGAADHVGV
YLGNGKFIQSPRTGEEIRVSYLGDNYWQDHYLGARRVMTPKTIR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=139, Percent_Identity=72.6618705035971, Blast_Score=244, Evalue=5e-66,
Organism=Escherichia coli, GI1786421, Length=129, Percent_Identity=60.4651162790698, Blast_Score=184, Evalue=8e-48,
Organism=Escherichia coli, GI1788501, Length=114, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788001, Length=112, Percent_Identity=33.0357142857143, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 32291; Mature: 32291

Theoretical pI: Translated: 11.37; Mature: 11.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EECCCEEECCCCCCCCEEEEECCCCCCHHHHCCCHHCCCCCCCC
>Mature Secondary Structure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EECCCEEECCCCCCCCEEEEECCCCCCHHHHCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]