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The map label for this gene is sodB [H]

Identifier: 238920005

GI number: 238920005

Start: 2028610

End: 2029188

Strand: Direct

Name: sodB [H]

Synonym: NT01EI_2109

Alternate gene names: 238920005

Gene position: 2028610-2029188 (Clockwise)

Preceding gene: 238920004

Following gene: 238920006

Centisome position: 53.21

GC content: 55.27

Gene sequence:

>579_bases
ATGTCATTTGAATTACCTGAATTACCGTACGCTATGAATGCGCTGGAGCCACATATTTCCGCCGAAACGCTGGAATATCA
CTACGGTAAGCACCACAACGCCTATGTGGTCAACCTGAATAATCTGATCAAAGGCACTGAGTTCGAAGGAAAATCTCTGG
AAGAGATCGTGAAGGGCTCCTCCGGCGGTATTTTTAACAACGCGGCTCAGGTGTGGAACCACACCTTCTACTGGCACTGC
CTCTCTCCAAACGGCGGCGGCGAACCGTCCGGTGCCCTGGCTGACGCCATCAGCACTGCTTTCGGCTCATTTGCCGCGTT
CAAAGATGCGCTGACCAAGTCTGCCGTGGGTAACTTCGGCTCCGGCTGGACCTGGCTGGTGAAAAAGGCAGATGGCACCC
TGGCCATCGTCAACACCGCTAACGCTGCGACCCCGCTGACCGGCGACGACAAGCCGCTGCTGACCGTTGATGTGTGGGAG
CACGCCTACTACATCGACTACCGTAACGCACGCCCGGTGTACCTGGAAAACTTCTGGACGCTGGTTAACTGGGAGTTTGT
CGCCAAAAATCTGGCGTAA

Upstream 100 bases:

>100_bases
GACAACAAGATTTTTTCATTTTTATCTAACCGGCGGCGACGTCTTACGTACGTTGTTTACGGGTTAACCGCCTTGCCATA
GAAGCATGAAGGAGAGAGCT

Downstream 100 bases:

>100_bases
TTGATCGGCCAGAGAGACCAGAAAGGCGCTCACCGAGCGCCTTTCTTATTACCCCGCCGACTGACTTAGTGCAGCACCGC
GATCAGGCTAGCTACGACGA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSFELPELPYAMNALEPHISAETLEYHYGKHHNAYVVNLNNLIKGTEFEGKSLEEIVKGSSGGIFNNAAQVWNHTFYWHC
LSPNGGGEPSGALADAISTAFGSFAAFKDALTKSAVGNFGSGWTWLVKKADGTLAIVNTANAATPLTGDDKPLLTVDVWE
HAYYIDYRNARPVYLENFWTLVNWEFVAKNLA

Sequences:

>Translated_192_residues
MSFELPELPYAMNALEPHISAETLEYHYGKHHNAYVVNLNNLIKGTEFEGKSLEEIVKGSSGGIFNNAAQVWNHTFYWHC
LSPNGGGEPSGALADAISTAFGSFAAFKDALTKSAVGNFGSGWTWLVKKADGTLAIVNTANAATPLTGDDKPLLTVDVWE
HAYYIDYRNARPVYLENFWTLVNWEFVAKNLA
>Mature_191_residues
SFELPELPYAMNALEPHISAETLEYHYGKHHNAYVVNLNNLIKGTEFEGKSLEEIVKGSSGGIFNNAAQVWNHTFYWHCL
SPNGGGEPSGALADAISTAFGSFAAFKDALTKSAVGNFGSGWTWLVKKADGTLAIVNTANAATPLTGDDKPLLTVDVWEH
AYYIDYRNARPVYLENFWTLVNWEFVAKNLA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=197, Percent_Identity=46.1928934010152, Blast_Score=160, Evalue=5e-40,
Organism=Homo sapiens, GI67782305, Length=197, Percent_Identity=46.1928934010152, Blast_Score=160, Evalue=5e-40,
Organism=Homo sapiens, GI67782309, Length=189, Percent_Identity=40.2116402116402, Blast_Score=122, Evalue=2e-28,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=77.0833333333333, Blast_Score=317, Evalue=2e-88,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=41.2621359223301, Blast_Score=150, Evalue=4e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=38.8888888888889, Blast_Score=128, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=38.5786802030457, Blast_Score=127, Evalue=4e-30,
Organism=Saccharomyces cerevisiae, GI6321796, Length=209, Percent_Identity=34.9282296650718, Blast_Score=114, Evalue=9e-27,
Organism=Drosophila melanogaster, GI17136812, Length=190, Percent_Identity=40.5263157894737, Blast_Score=129, Evalue=2e-30,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21134; Mature: 21003

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFELPELPYAMNALEPHISAETLEYHYGKHHNAYVVNLNNLIKGTEFEGKSLEEIVKGS
CCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCC
SGGIFNNAAQVWNHTFYWHCLSPNGGGEPSGALADAISTAFGSFAAFKDALTKSAVGNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SGWTWLVKKADGTLAIVNTANAATPLTGDDKPLLTVDVWEHAYYIDYRNARPVYLENFWT
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCEEEECEEE
LVNWEFVAKNLA
EEEHHHHHHCCC
>Mature Secondary Structure 
SFELPELPYAMNALEPHISAETLEYHYGKHHNAYVVNLNNLIKGTEFEGKSLEEIVKGS
CCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCC
SGGIFNNAAQVWNHTFYWHCLSPNGGGEPSGALADAISTAFGSFAAFKDALTKSAVGNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SGWTWLVKKADGTLAIVNTANAATPLTGDDKPLLTVDVWEHAYYIDYRNARPVYLENFWT
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCEEEECEEE
LVNWEFVAKNLA
EEEHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]