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The map label for this gene is rnfC

Identifier: 238919984

GI number: 238919984

Start: 2008659

End: 2011061

Strand: Direct

Name: rnfC

Synonym: NT01EI_2088

Alternate gene names: 238919984

Gene position: 2008659-2011061 (Clockwise)

Preceding gene: 238919983

Following gene: 238919985

Centisome position: 52.69

GC content: 65.92

Gene sequence:

>2403_bases
ATGTTTAAGCTGTTCGCCGCACTGCGTAAAGAGAGACTGTGGGACTTTACAGGGGGGATCCACCCCCCTGAGATGAAACA
GATCTCCAGCGAGATCCCGCTGCGCCGCATTCCGCTGCCGAATCTGCTGATCATTCCGCTGCAGCAGCACCTGGGACCCG
AGGGGGAGCTGCTGGTCAAGGTGGGCGAACGGGTGCTGAAAGGCCAGCCGCTCACCCGCGGCAATGGTCGTACCCTGCCG
GTACATGCGTCAACCTCCGGCACCATCAGCGCCATCTCGCGTCAGGTGACCGCCCACCCCTCCGGCCTGCCCGAGCTGTG
CATCAGCCTGGTCCCCGACCAGCAGGACTGCTGGGGAGAGCGTCACCCGCTGCCCGACTATCGCGCCATGACGCCCCCGG
CGCTGATCGACCATATCCATCAGGCCGGGATCGCCGGACTCGGCGGCGCCGGTTTCCCAACAGCCGCCAAACTCAACGGC
GGCGCGGATCGCATTAATACCCTGATCATCAACGCCGCCGAGTGTGAGCCCTACATCACTGCTGACGACCGCCTGATGCG
CGAACACGCCGCGGAAATCGTCAGCGGCTGCGCGATATTGAGCCACATTCTGGCGCCAGAACGGGTGTTGATTGGTATTG
AGGACAATAAACCGCAGGCGATCGCTGCCCTGCGTCATGCGTTACAGTGTCACGAAAAGATACAACTGCGGGTGATCCCC
ACCAAGTATCCCTCTGGCGGCGCTAAGCAGCTGATCAAGATCCTGACCGGCATGGAGGTTCCCCACGGCCGACACTCGGC
CTCCATCGGCGTCCTGATGCAAAACGTGGCAACGGTCTACGCCATCAAGCGCGCCGTCATCGACGGAGAGCCGCTGATCG
AACGCGTGGTCACCCTGACAGGTGAGCAGATGCACCGCCCGGGAAATGTCTGGGCCGCTATCGGTACGCCGGTGAAGCAT
CTGCTGCAAAACGGCGGCCTTATTGCACAGAACAAGCACCCGATGGTGATCATGGGAGGTCCGCTAATGGGCTTTACCCT
GTCACGCCTCGGCGTACCGGTGGTCAAGATAACCAACTGTATTCTGACCCCTTCGCGCGATGAATTCAGCGTACCGCAGG
CGGAGCAGCCCTGCATTCGCTGTGGCGCCTGCGCCGACGTCTGCCCGGCGCGCCTGCTGCCCCAGCAGCTGTACTGGTTC
AGCCAGGGCAAGGAGCACGATAAGGCGCGCGGCTACCATCTACAGGAGTGCATCGAGTGTGGCGCCTGTGCCTACGTGTG
CCCCAGCAACATCCCGCTGGTGCAGTACTATCGCCAGGAGAAGGCCGAGATCCGCGCGTTGGACGATGAGGCCCGACGCG
CCGCCGAGGCCAAGGCGCGCTTCGAGGCGCGTCTGGCACGCCTTGAACGGGAAAAGGCGGCGCGCGAACAGCGTCACAAA
CAGGCCGCCGTCAGCGTCAGCAACAGCGATCGCGAGACCATCCAAGCCGCGCTGCAGCGCATTAACCTACGTAAGGCGGG
CCAGACCGATGACGTCGCCGCGGTAAACGATCCGCGCCAGGCGGCGCTGGCGGCCGCCATCGCCCGCGCCAAAGCCAAGC
AGGCCGGGGCCACACCGGCACCGGCGGCCACGGACAGTGACGCTGCCGCTCCGGCACCACAGGATGACCCGCGTAAGGCG
GCCATCGCCGCAGCCATCACCCGAGCCAAAGCCAAGCAGGCCGGGGCCACACCGGCACCGGCGGCCACGAACAGTGACGC
TGTCGCTCCGGCGCCGCAGGATGACCCTCGTAAGGCGGCCATCGCCCGTGCCAAAGCCAAGCAGGCCGGGGCCACACCGG
CACCGGCGGCCACGAACAGTGACGCTGTCGCTCCGGCGCCGCAGGATGACCCGCGCAAGGCGGCCATCGCCGCCGCCATC
GCCCGCGCCAAAGCCAAAGCCAAGCAGGCCGGGGCCACACCGGCACCGGCGACCACGGACAGTGACGCTGCCGATCCGGC
GCCGCAGGATGACCCGCGCAAGGCGGCCATCGCCGCCGCCATCGCCCGCGCCAAAGCCAAGCAGGCCGCCTCCGGACATG
CCACGACAGAGCCGGTGACCGTACAGGAAAATACCGATGGCGCGCGTCGTCAGATCCACCGGGCAACGCTGCAGGCAGCC
TACGCATCAGGGGCTGGTGCGGATCTTACGGCAGCAGCGGAGGGAGCCACGCCGGAGTCCGATCGTCAGGCGGCGATTGC
GACGGCTATCGCCCGGGTGAAAGCCCGTCAGACCCTGGTCAACGGGGAGGTCCCCAAGCCTGTCGCTACTTCTACCCCCA
CGGATACGCAGAAAGCGGCCGTCGCGGCCGCTATCGCCCGCATTAAAGCAAAGCAGGCGTCCGCAGCGCCAAGCGAGGAA
TAA

Upstream 100 bases:

>100_bases
CCGACGTCGTGTATCCAGCTGGTGCCCGTCCCTACCACGACCGCCACCTGGAAATGGAATTTGCAGACCATTCCCGTACA
TATTCTGGAAGTTGAGCGCC

Downstream 100 bases:

>100_bases
ATGGCATTCAGAATCGCCAGTTCACCCTTTACCCATAACCGCCAGAACACGGGGCGCATCATGTTCTGGGTCGTTGCCGC
CGCCCTGCCCGGCATCGTGG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 800; Mature: 800

Protein sequence:

>800_residues
MFKLFAALRKERLWDFTGGIHPPEMKQISSEIPLRRIPLPNLLIIPLQQHLGPEGELLVKVGERVLKGQPLTRGNGRTLP
VHASTSGTISAISRQVTAHPSGLPELCISLVPDQQDCWGERHPLPDYRAMTPPALIDHIHQAGIAGLGGAGFPTAAKLNG
GADRINTLIINAAECEPYITADDRLMREHAAEIVSGCAILSHILAPERVLIGIEDNKPQAIAALRHALQCHEKIQLRVIP
TKYPSGGAKQLIKILTGMEVPHGRHSASIGVLMQNVATVYAIKRAVIDGEPLIERVVTLTGEQMHRPGNVWAAIGTPVKH
LLQNGGLIAQNKHPMVIMGGPLMGFTLSRLGVPVVKITNCILTPSRDEFSVPQAEQPCIRCGACADVCPARLLPQQLYWF
SQGKEHDKARGYHLQECIECGACAYVCPSNIPLVQYYRQEKAEIRALDDEARRAAEAKARFEARLARLEREKAAREQRHK
QAAVSVSNSDRETIQAALQRINLRKAGQTDDVAAVNDPRQAALAAAIARAKAKQAGATPAPAATDSDAAAPAPQDDPRKA
AIAAAITRAKAKQAGATPAPAATNSDAVAPAPQDDPRKAAIARAKAKQAGATPAPAATNSDAVAPAPQDDPRKAAIAAAI
ARAKAKAKQAGATPAPATTDSDAADPAPQDDPRKAAIAAAIARAKAKQAASGHATTEPVTVQENTDGARRQIHRATLQAA
YASGAGADLTAAAEGATPESDRQAAIATAIARVKARQTLVNGEVPKPVATSTPTDTQKAAVAAAIARIKAKQASAAPSEE

Sequences:

>Translated_800_residues
MFKLFAALRKERLWDFTGGIHPPEMKQISSEIPLRRIPLPNLLIIPLQQHLGPEGELLVKVGERVLKGQPLTRGNGRTLP
VHASTSGTISAISRQVTAHPSGLPELCISLVPDQQDCWGERHPLPDYRAMTPPALIDHIHQAGIAGLGGAGFPTAAKLNG
GADRINTLIINAAECEPYITADDRLMREHAAEIVSGCAILSHILAPERVLIGIEDNKPQAIAALRHALQCHEKIQLRVIP
TKYPSGGAKQLIKILTGMEVPHGRHSASIGVLMQNVATVYAIKRAVIDGEPLIERVVTLTGEQMHRPGNVWAAIGTPVKH
LLQNGGLIAQNKHPMVIMGGPLMGFTLSRLGVPVVKITNCILTPSRDEFSVPQAEQPCIRCGACADVCPARLLPQQLYWF
SQGKEHDKARGYHLQECIECGACAYVCPSNIPLVQYYRQEKAEIRALDDEARRAAEAKARFEARLARLEREKAAREQRHK
QAAVSVSNSDRETIQAALQRINLRKAGQTDDVAAVNDPRQAALAAAIARAKAKQAGATPAPAATDSDAAAPAPQDDPRKA
AIAAAITRAKAKQAGATPAPAATNSDAVAPAPQDDPRKAAIARAKAKQAGATPAPAATNSDAVAPAPQDDPRKAAIAAAI
ARAKAKAKQAGATPAPATTDSDAADPAPQDDPRKAAIAAAIARAKAKQAASGHATTEPVTVQENTDGARRQIHRATLQAA
YASGAGADLTAAAEGATPESDRQAAIATAIARVKARQTLVNGEVPKPVATSTPTDTQKAAVAAAIARIKAKQASAAPSEE
>Mature_800_residues
MFKLFAALRKERLWDFTGGIHPPEMKQISSEIPLRRIPLPNLLIIPLQQHLGPEGELLVKVGERVLKGQPLTRGNGRTLP
VHASTSGTISAISRQVTAHPSGLPELCISLVPDQQDCWGERHPLPDYRAMTPPALIDHIHQAGIAGLGGAGFPTAAKLNG
GADRINTLIINAAECEPYITADDRLMREHAAEIVSGCAILSHILAPERVLIGIEDNKPQAIAALRHALQCHEKIQLRVIP
TKYPSGGAKQLIKILTGMEVPHGRHSASIGVLMQNVATVYAIKRAVIDGEPLIERVVTLTGEQMHRPGNVWAAIGTPVKH
LLQNGGLIAQNKHPMVIMGGPLMGFTLSRLGVPVVKITNCILTPSRDEFSVPQAEQPCIRCGACADVCPARLLPQQLYWF
SQGKEHDKARGYHLQECIECGACAYVCPSNIPLVQYYRQEKAEIRALDDEARRAAEAKARFEARLARLEREKAAREQRHK
QAAVSVSNSDRETIQAALQRINLRKAGQTDDVAAVNDPRQAALAAAIARAKAKQAGATPAPAATDSDAAAPAPQDDPRKA
AIAAAITRAKAKQAGATPAPAATNSDAVAPAPQDDPRKAAIARAKAKQAGATPAPAATNSDAVAPAPQDDPRKAAIAAAI
ARAKAKAKQAGATPAPATTDSDAADPAPQDDPRKAAIAAAIARAKAKQAASGHATTEPVTVQENTDGARRQIHRATLQAA
YASGAGADLTAAAEGATPESDRQAAIATAIARVKARQTLVNGEVPKPVATSTPTDTQKAAVAAAIARIKAKQASAAPSEE

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787916, Length=635, Percent_Identity=59.5275590551181, Blast_Score=696, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFC_EDWI9 (C5BDE7)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002933499.1
- GeneID:   7959066
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_2088
- OMA:   PQQLFWH
- ProtClustDB:   CLSK2813242
- GO:   GO:0006810
- HAMAP:   MF_00461
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554
- Gene3D:   G3DSA:1.10.1060.10
- TIGRFAMs:   TIGR01945

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB; SSF46548 Helical_ferredxn

EC number: NA

Molecular weight: Translated: 84261; Mature: 84261

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLFAALRKERLWDFTGGIHPPEMKQISSEIPLRRIPLPNLLIIPLQQHLGPEGELLVK
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEECCCCCEEEEECHHHCCCCCHHHHH
VGERVLKGQPLTRGNGRTLPVHASTSGTISAISRQVTAHPSGLPELCISLVPDQQDCWGE
HHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHCCC
RHPLPDYRAMTPPALIDHIHQAGIAGLGGAGFPTAAKLNGGADRINTLIINAAECEPYIT
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHEEEEEECCCCCEEC
ADDRLMREHAAEIVSGCAILSHILAPERVLIGIEDNKPQAIAALRHALQCHEKIQLRVIP
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEC
TKYPSGGAKQLIKILTGMEVPHGRHSASIGVLMQNVATVYAIKRAVIDGEPLIERVVTLT
CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GEQMHRPGNVWAAIGTPVKHLLQNGGLIAQNKHPMVIMGGPLMGFTLSRLGVPVVKITNC
HHHHCCCCCEEEECCHHHHHHHHCCCEEEECCCCEEEECCCHHHHHHHHHCCCHHHHHHE
ILTPSRDEFSVPQAEQPCIRCGACADVCPARLLPQQLYWFSQGKEHDKARGYHLQECIEC
EECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHH
GACAYVCPSNIPLVQYYRQEKAEIRALDDEARRAAEAKARFEARLARLEREKAAREQRHK
CCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAAVSVSNSDRETIQAALQRINLRKAGQTDDVAAVNDPRQAALAAAIARAKAKQAGATPA
HHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
PAATDSDAAAPAPQDDPRKAAIAAAITRAKAKQAGATPAPAATNSDAVAPAPQDDPRKAA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
IARAKAKQAGATPAPAATNSDAVAPAPQDDPRKAAIAAAIARAKAKAKQAGATPAPATTD
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
SDAADPAPQDDPRKAAIAAAIARAKAKQAASGHATTEPVTVQENTDGARRQIHRATLQAA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHH
YASGAGADLTAAAEGATPESDRQAAIATAIARVKARQTLVNGEVPKPVATSTPTDTQKAA
HHCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
VAAAIARIKAKQASAAPSEE
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFKLFAALRKERLWDFTGGIHPPEMKQISSEIPLRRIPLPNLLIIPLQQHLGPEGELLVK
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEECCCCCEEEEECHHHCCCCCHHHHH
VGERVLKGQPLTRGNGRTLPVHASTSGTISAISRQVTAHPSGLPELCISLVPDQQDCWGE
HHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHCCC
RHPLPDYRAMTPPALIDHIHQAGIAGLGGAGFPTAAKLNGGADRINTLIINAAECEPYIT
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHEEEEEECCCCCEEC
ADDRLMREHAAEIVSGCAILSHILAPERVLIGIEDNKPQAIAALRHALQCHEKIQLRVIP
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEC
TKYPSGGAKQLIKILTGMEVPHGRHSASIGVLMQNVATVYAIKRAVIDGEPLIERVVTLT
CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GEQMHRPGNVWAAIGTPVKHLLQNGGLIAQNKHPMVIMGGPLMGFTLSRLGVPVVKITNC
HHHHCCCCCEEEECCHHHHHHHHCCCEEEECCCCEEEECCCHHHHHHHHHCCCHHHHHHE
ILTPSRDEFSVPQAEQPCIRCGACADVCPARLLPQQLYWFSQGKEHDKARGYHLQECIEC
EECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHH
GACAYVCPSNIPLVQYYRQEKAEIRALDDEARRAAEAKARFEARLARLEREKAAREQRHK
CCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAAVSVSNSDRETIQAALQRINLRKAGQTDDVAAVNDPRQAALAAAIARAKAKQAGATPA
HHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
PAATDSDAAAPAPQDDPRKAAIAAAITRAKAKQAGATPAPAATNSDAVAPAPQDDPRKAA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
IARAKAKQAGATPAPAATNSDAVAPAPQDDPRKAAIAAAIARAKAKAKQAGATPAPATTD
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
SDAADPAPQDDPRKAAIAAAIARAKAKQAASGHATTEPVTVQENTDGARRQIHRATLQAA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHH
YASGAGADLTAAAEGATPESDRQAAIATAIARVKARQTLVNGEVPKPVATSTPTDTQKAA
HHCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
VAAAIARIKAKQASAAPSEE
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA