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The map label for this gene is rnfD [H]

Identifier: 238919985

GI number: 238919985

Start: 2011062

End: 2012099

Strand: Direct

Name: rnfD [H]

Synonym: NT01EI_2089

Alternate gene names: 238919985

Gene position: 2011062-2012099 (Clockwise)

Preceding gene: 238919984

Following gene: 238919986

Centisome position: 52.75

GC content: 64.55

Gene sequence:

>1038_bases
ATGGCATTCAGAATCGCCAGTTCACCCTTTACCCATAACCGCCAGAACACGGGGCGCATCATGTTCTGGGTCGTTGCCGC
CGCCCTGCCCGGCATCGTGGTGCAAATCTACTTTTTTGGCTACGGCACGCTGATCCAGCTCACGTTGGCCATTCTCACCG
CCTGCCTCTGTGAGGCGCTGGTGCTGCGTCTGCGCCGACGCCCGCTCAGTACGCTCGGCGATAATTCCGCACTGCTGACC
GGGCTGCTGCTGGGCATCAGCCTGCCGCCGCTGGCACCCTGGTGGCTGGTCGTACTCGGCAGCGCGTTTGCCATCATCAT
CGCCAAGCAGCTGTACGGCGGGCTGGGGCAGAACCCCTTCAACCCGGCCATGGTCGGCTATGTCATGCTATTGATTGCCT
TCCCGGTGCCCATGACCACCTGGTTGCCACCGCAGAGCCTGCTGAGTCAGCCGCTGGATCTCAGCCATACCCTGTCACAG
ATCTTCAGTGGTCACGCCGCCGATCTGCACGCCCTGCTCAGCGTGGACGGCGTGAGCTCCGCCACGCCACTCGACAGCGT
GAAGACCGGGCTGCGCAGCGGCCAGACGCTGACGGAGATCTTCCGCCAGCCCATCTGGCAGGGTGAGTTGGCCGGTTTAG
GGTGGCAATGGGTCAACGCGGGGTTCCTGCTCGGCGGCCTGCTGCTGCTGCTGCGCCGTATTATTCACTGGCAGATCCCG
CTGGGCTTTCTGGCCGCCATGGCGCTGTGCGCCGCGCTGGGCAGCGGGATGGCGCCGCAGAGCATTGCCCCGCCGCTGAC
CACCCTGTTCTCCGGTGCCACCATGCTGGGCGCGTTTTTCATTGCTACCGATCCGGTCACCGCCGCCACCACACCGCGCG
GTCGCCTGATCTTTGGCCTGCTGTGCGGCGTGCTGGTCTGGCTGATCCGTACCTACGGTGGCTACCCCGACGGCGTCGCC
TTTGCGGTACTGCTGGCCAATATCTGTGTGCCGCTGATCGACCACTACACCCAGCCGCGCGTTTACGGACATCGCTAA

Upstream 100 bases:

>100_bases
CGCTACTTCTACCCCCACGGATACGCAGAAAGCGGCCGTCGCGGCCGCTATCGCCCGCATTAAAGCAAAGCAGGCGTCCG
CAGCGCCAAGCGAGGAATAA

Downstream 100 bases:

>100_bases
GGAGTCCTCATGCTAACCACTATGCGCCGCCACGGAATCCGCCTGGCCCTGTTTGCCATCCTCGCCACCGCGCTGACGGC
CATCGTGCATCAGTTAACCA

Product: hypothetical protein

Products: NA

Alternate protein names: Nitrogen fixation protein rnfD [H]

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MAFRIASSPFTHNRQNTGRIMFWVVAAALPGIVVQIYFFGYGTLIQLTLAILTACLCEALVLRLRRRPLSTLGDNSALLT
GLLLGISLPPLAPWWLVVLGSAFAIIIAKQLYGGLGQNPFNPAMVGYVMLLIAFPVPMTTWLPPQSLLSQPLDLSHTLSQ
IFSGHAADLHALLSVDGVSSATPLDSVKTGLRSGQTLTEIFRQPIWQGELAGLGWQWVNAGFLLGGLLLLLRRIIHWQIP
LGFLAAMALCAALGSGMAPQSIAPPLTTLFSGATMLGAFFIATDPVTAATTPRGRLIFGLLCGVLVWLIRTYGGYPDGVA
FAVLLANICVPLIDHYTQPRVYGHR

Sequences:

>Translated_345_residues
MAFRIASSPFTHNRQNTGRIMFWVVAAALPGIVVQIYFFGYGTLIQLTLAILTACLCEALVLRLRRRPLSTLGDNSALLT
GLLLGISLPPLAPWWLVVLGSAFAIIIAKQLYGGLGQNPFNPAMVGYVMLLIAFPVPMTTWLPPQSLLSQPLDLSHTLSQ
IFSGHAADLHALLSVDGVSSATPLDSVKTGLRSGQTLTEIFRQPIWQGELAGLGWQWVNAGFLLGGLLLLLRRIIHWQIP
LGFLAAMALCAALGSGMAPQSIAPPLTTLFSGATMLGAFFIATDPVTAATTPRGRLIFGLLCGVLVWLIRTYGGYPDGVA
FAVLLANICVPLIDHYTQPRVYGHR
>Mature_344_residues
AFRIASSPFTHNRQNTGRIMFWVVAAALPGIVVQIYFFGYGTLIQLTLAILTACLCEALVLRLRRRPLSTLGDNSALLTG
LLLGISLPPLAPWWLVVLGSAFAIIIAKQLYGGLGQNPFNPAMVGYVMLLIAFPVPMTTWLPPQSLLSQPLDLSHTLSQI
FSGHAADLHALLSVDGVSSATPLDSVKTGLRSGQTLTEIFRQPIWQGELAGLGWQWVNAGFLLGGLLLLLRRIIHWQIPL
GFLAAMALCAALGSGMAPQSIAPPLTTLFSGATMLGAFFIATDPVTAATTPRGRLIFGLLCGVLVWLIRTYGGYPDGVAF
AVLLANICVPLIDHYTQPRVYGHR

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=350, Percent_Identity=63.1428571428571, Blast_Score=439, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 37095; Mature: 36963

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00099 THIOLASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFRIASSPFTHNRQNTGRIMFWVVAAALPGIVVQIYFFGYGTLIQLTLAILTACLCEAL
CCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRLRRRPLSTLGDNSALLTGLLLGISLPPLAPWWLVVLGSAFAIIIAKQLYGGLGQNPF
HHHHHHCCHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
NPAMVGYVMLLIAFPVPMTTWLPPQSLLSQPLDLSHTLSQIFSGHAADLHALLSVDGVSS
CHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCC
ATPLDSVKTGLRSGQTLTEIFRQPIWQGELAGLGWQWVNAGFLLGGLLLLLRRIIHWQIP
CCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LGFLAAMALCAALGSGMAPQSIAPPLTTLFSGATMLGAFFIATDPVTAATTPRGRLIFGL
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LCGVLVWLIRTYGGYPDGVAFAVLLANICVPLIDHYTQPRVYGHR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AFRIASSPFTHNRQNTGRIMFWVVAAALPGIVVQIYFFGYGTLIQLTLAILTACLCEAL
CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRLRRRPLSTLGDNSALLTGLLLGISLPPLAPWWLVVLGSAFAIIIAKQLYGGLGQNPF
HHHHHHCCHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
NPAMVGYVMLLIAFPVPMTTWLPPQSLLSQPLDLSHTLSQIFSGHAADLHALLSVDGVSS
CHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCC
ATPLDSVKTGLRSGQTLTEIFRQPIWQGELAGLGWQWVNAGFLLGGLLLLLRRIIHWQIP
CCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LGFLAAMALCAALGSGMAPQSIAPPLTTLFSGATMLGAFFIATDPVTAATTPRGRLIFGL
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LCGVLVWLIRTYGGYPDGVAFAVLLANICVPLIDHYTQPRVYGHR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA