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The map label for this gene is rnfB

Identifier: 238919983

GI number: 238919983

Start: 2008091

End: 2008666

Strand: Direct

Name: rnfB

Synonym: NT01EI_2087

Alternate gene names: 238919983

Gene position: 2008091-2008666 (Clockwise)

Preceding gene: 238919982

Following gene: 238919984

Centisome position: 52.67

GC content: 62.15

Gene sequence:

>576_bases
ATGTCTTCATTATGGATAGCGATCGCCGCCGTCAGCGCCATTGCGCTGGTCTCCGGCCTGATCCTGGGGTTTGCCGCCCG
CCGTTTTCAGGTGGAAGCGGACCCCATCGTAGAACGTATTGATGCCCTGCTGCCACAGAGCCAGTGTGGCCAGTGCGGCT
ACCCAGGCTGCCGCCCCTATGCCGAAGCCGTCGCCAACGGGGAGAAGATCAATCGCTGTGCGCCGGGCGGCGAGGCGGTG
ATGCGCAATATTGCCGCGCTGCTGGCCGTTGATCCGCAGCCGCTGGAAGGCGATGGCGTCCAGAGCGAACCTCAGCGCCA
GGTTGCACTGATCGACGAGGCCAACTGTATCGGCTGCACCAAGTGTATTCAATCCTGCCCGGTCGACGCCATCGTCGGCG
CGACGCGGGCACTGCACACCGTCATCAGCGATCAGTGTACCGGCTGTGGCCTGTGTCTTCCGCCCTGCCCGACGTCGTGT
ATCCAGCTGGTGCCCGTCCCTACCACGACCGCCACCTGGAAATGGAATTTGCAGACCATTCCCGTACATATTCTGGAAGT
TGAGCGCCATGTTTAA

Upstream 100 bases:

>100_bases
CTGACGTCCCGGCACCGTTTCGTGGCGCATCCATTGCCCTTATCACCGCCGGGCTGATGTCTCTTGCCTTTATGGGCTTT
AGCGGATTGGTAAAATTCTA

Downstream 100 bases:

>100_bases
GCTGTTCGCCGCACTGCGTAAAGAGAGACTGTGGGACTTTACAGGGGGGATCCACCCCCCTGAGATGAAACAGATCTCCA
GCGAGATCCCGCTGCGCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSSLWIAIAAVSAIALVSGLILGFAARRFQVEADPIVERIDALLPQSQCGQCGYPGCRPYAEAVANGEKINRCAPGGEAV
MRNIAALLAVDPQPLEGDGVQSEPQRQVALIDEANCIGCTKCIQSCPVDAIVGATRALHTVISDQCTGCGLCLPPCPTSC
IQLVPVPTTTATWKWNLQTIPVHILEVERHV

Sequences:

>Translated_191_residues
MSSLWIAIAAVSAIALVSGLILGFAARRFQVEADPIVERIDALLPQSQCGQCGYPGCRPYAEAVANGEKINRCAPGGEAV
MRNIAALLAVDPQPLEGDGVQSEPQRQVALIDEANCIGCTKCIQSCPVDAIVGATRALHTVISDQCTGCGLCLPPCPTSC
IQLVPVPTTTATWKWNLQTIPVHILEVERHV
>Mature_190_residues
SSLWIAIAAVSAIALVSGLILGFAARRFQVEADPIVERIDALLPQSQCGQCGYPGCRPYAEAVANGEKINRCAPGGEAVM
RNIAALLAVDPQPLEGDGVQSEPQRQVALIDEANCIGCTKCIQSCPVDAIVGATRALHTVISDQCTGCGLCLPPCPTSCI
QLVPVPTTTATWKWNLQTIPVHILEVERHV

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787915, Length=191, Percent_Identity=69.6335078534031, Blast_Score=279, Evalue=7e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFB_EDWI9 (C5BDE6)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002933498.1
- GeneID:   7959065
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_2087
- OMA:   KFKVEGD
- ProtClustDB:   CLSK2813241
- GO:   GO:0006810
- HAMAP:   MF_00463
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- PIRSF:   PIRSF005784
- TIGRFAMs:   TIGR01944

Pfam domain/function: PF04060 FeS

EC number: NA

Molecular weight: Translated: 20199; Mature: 20067

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
6.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLWIAIAAVSAIALVSGLILGFAARRFQVEADPIVERIDALLPQSQCGQCGYPGCRPY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHCCHHHCCCCCCCCCCHH
AEAVANGEKINRCAPGGEAVMRNIAALLAVDPQPLEGDGVQSEPQRQVALIDEANCIGCT
HHHHHCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
KCIQSCPVDAIVGATRALHTVISDQCTGCGLCLPPCPTSCIQLVPVPTTTATWKWNLQTI
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCEEC
PVHILEVERHV
CEEEEEECCCC
>Mature Secondary Structure 
SSLWIAIAAVSAIALVSGLILGFAARRFQVEADPIVERIDALLPQSQCGQCGYPGCRPY
CCHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHCCHHHCCCCCCCCCCHH
AEAVANGEKINRCAPGGEAVMRNIAALLAVDPQPLEGDGVQSEPQRQVALIDEANCIGCT
HHHHHCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
KCIQSCPVDAIVGATRALHTVISDQCTGCGLCLPPCPTSCIQLVPVPTTTATWKWNLQTI
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCEEC
PVHILEVERHV
CEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA