Click here to switch to the map view.

The map label for this gene is rnfA

Identifier: 238919982

GI number: 238919982

Start: 2007510

End: 2008091

Strand: Direct

Name: rnfA

Synonym: NT01EI_2086

Alternate gene names: 238919982

Gene position: 2007510-2008091 (Clockwise)

Preceding gene: 238919981

Following gene: 238919983

Centisome position: 52.66

GC content: 54.81

Gene sequence:

>582_bases
ATGACCGATTATCTGTTGTTGCTGGTCGGTACTGTCCTGGTCAATAACTTCGTCCTGGTTAAATTTCTCGGCCTGTGCCC
TTTTATGGGGGTATCGAAAAAGCTTGAGACGGCGATGGGCATGGGACTGGCAACCACCTTTGTACTCACCCTGGCGTCCG
TTTGCGCCTGGGCCGTAAACCAGTTTATTCTGGTACCGCTGGGGCTGGCCTATCTGCGCACCCTGACCTTTATCCTGGTC
ATTGCTGTCGTGGTACAATTTACTGAACTGGCGGTGCGTAAAACCAGCCCGATGCTATATCGCCTGCTGGGCATTTTTCT
GCCGCTGATCACCACCAACTGTGCGGTACTCGGCGTAGCGCTGCTCAACGTCAATCAGTCGCACAACTTTCTGCAGTCAG
CCGTGTACGGTTTCAGCGCCGCCGTCGGCTTCTCACTGGTAATGGTGCTGTTTGCCGCCATCCGTGAACGACTGGCGCTG
GCTGACGTCCCGGCACCGTTTCGTGGCGCATCCATTGCCCTTATCACCGCCGGGCTGATGTCTCTTGCCTTTATGGGCTT
TAGCGGATTGGTAAAATTCTAA

Upstream 100 bases:

>100_bases
AATACCCCTACGTTTGATCTGTTGTCGTCAGCCGACTAAACCCCGATAATACGGCGGTTTCATCTTCCAGCTGATCTTTC
TGCTTTGTAGGTTTTGTGTG

Downstream 100 bases:

>100_bases
TGTCTTCATTATGGATAGCGATCGCCGCCGTCAGCGCCATTGCGCTGGTCTCCGGCCTGATCCTGGGGTTTGCCGCCCGC
CGTTTTCAGGTGGAAGCGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MTDYLLLLVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVLTLASVCAWAVNQFILVPLGLAYLRTLTFILV
IAVVVQFTELAVRKTSPMLYRLLGIFLPLITTNCAVLGVALLNVNQSHNFLQSAVYGFSAAVGFSLVMVLFAAIRERLAL
ADVPAPFRGASIALITAGLMSLAFMGFSGLVKF

Sequences:

>Translated_193_residues
MTDYLLLLVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVLTLASVCAWAVNQFILVPLGLAYLRTLTFILV
IAVVVQFTELAVRKTSPMLYRLLGIFLPLITTNCAVLGVALLNVNQSHNFLQSAVYGFSAAVGFSLVMVLFAAIRERLAL
ADVPAPFRGASIALITAGLMSLAFMGFSGLVKF
>Mature_192_residues
TDYLLLLVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVLTLASVCAWAVNQFILVPLGLAYLRTLTFILVI
AVVVQFTELAVRKTSPMLYRLLGIFLPLITTNCAVLGVALLNVNQSHNFLQSAVYGFSAAVGFSLVMVLFAAIRERLALA
DVPAPFRGASIALITAGLMSLAFMGFSGLVKF

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787914, Length=192, Percent_Identity=88.5416666666667, Blast_Score=338, Evalue=1e-94,
Organism=Escherichia coli, GI1787919, Length=156, Percent_Identity=35.2564102564103, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFA_EDWI9 (C5BDE5)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002933497.1
- GeneID:   7959064
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_2086
- OMA:   LRTIAFI
- ProtClustDB:   CLSK2813240
- GO:   GO:0006810
- HAMAP:   MF_00459
- InterPro:   IPR003667
- InterPro:   IPR011293
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01943

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 20703; Mature: 20572

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1cb83d48)-; HASH(0x1d9b2d4c)-; HASH(0x1cfa58b8)-; HASH(0x1d67194c)-; HASH(0x1ce6923c)-; HASH(0x1c9cdc90)-;

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDYLLLLVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVLTLASVCAWAVN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFILVPLGLAYLRTLTFILVIAVVVQFTELAVRKTSPMLYRLLGIFLPLITTNCAVLGVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNVNQSHNFLQSAVYGFSAAVGFSLVMVLFAAIRERLALADVPAPFRGASIALITAGLM
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
SLAFMGFSGLVKF
HHHHHHHHHHCCH
>Mature Secondary Structure 
TDYLLLLVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVLTLASVCAWAVN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFILVPLGLAYLRTLTFILVIAVVVQFTELAVRKTSPMLYRLLGIFLPLITTNCAVLGVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNVNQSHNFLQSAVYGFSAAVGFSLVMVLFAAIRERLALADVPAPFRGASIALITAGLM
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
SLAFMGFSGLVKF
HHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA