| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919903
Identifier: 238919903
GI number: 238919903
Start: 1937864
End: 1938865
Strand: Reverse
Name: 238919903
Synonym: NT01EI_2007
Alternate gene names: NA
Gene position: 1938865-1937864 (Counterclockwise)
Preceding gene: 238919906
Following gene: 238919902
Centisome position: 50.86
GC content: 62.97
Gene sequence:
>1002_bases ATGGACATCGATGATGCAGATATCGCCGGGAAGACACCGGACGAGCTGGAGGCACTGCTGGCGCAGGCCGGTAGCAATGA GGAGGACGTGTCCGCGGGCGAGGGCGATCCGGAACCGGCGATCGCACCGGACACGCCAGCGTCCGCAGGGGATGTGCCGC CTGAGGCTGCATTGGCATCGCCAGCTGGAGAAGAGCCGCAGGACGCTGCGGTCACCGATCCCGCCGCTAAAGTGGTACTG GGTAAGGATGGCGTACACCATATTCCCTACGATGTACTGCAGGCTGCCAGGGAGCAGGCGCGCCGCAGCGCACAGTCGGC GCAGTCCGCTGCCGAGGAGAATGCGGCGCTTAAGCGCACGCTGACGCTGCTGCAGCAGCAGGTGAGCCGGGCAGGGATGC AGCCGGCCACCCTGCCGGAAGAGACGCAGATCAGTACCGAGCAGTTGGATAAGGTGCGGGCGGACTTCCCGGAGCTGGCA GAGATGTTCGAGCAGGTGGTTAACCAGGTGAACTACCTGAATGCGCGGGCGAAGCCGAGTCCCAGCGAGGATGGTGGCGG AATCAACCCGGTGCTGGAGGCGATTGCGCGCAATCCCGATCTGGCACAGTGGTTCGATAGTGACATCGATCGGCGCGATT TTGCCATTACGGTGGATGAGCGTCTGAAAACCGATCCTGCCTGGCAAGACAAAACCCTGGATGCGCGTTTCGCTGAGGCC GCCCGACGTACCAAGGTCGCGTTTGGCGATCCGGACGTGGCCGTGGGGGCGACCTCAGCAGAATCGCTAAAAAAACAGGC GGAGGAGAAGCTGGCCGCGGCGGCCGCGACGCCCAGCGTACCCTCTTCGCCATCGGATGTGGGACAGCCGGTAACCCAGT CACCGCAGTCGGTGCTGGATAAGGCAGCCAATGCCAGTGATGGTGAACTGCTGGCCATGATGGCCGGAATGAGTGAGAGC CAGATCGAGGCATTGTTGTCACAGGCCGGTGATGCGTTTTAA
Upstream 100 bases:
>100_bases GCAAAGGGCTCTGTTATCGCAGAGCCCTTTTTCGCATGGGCAGCGACACGCCTTTTTCTGTTTCGGATCTATCCGACAAA TAGACAGGCAGGAGAGCAAT
Downstream 100 bases:
>100_bases CCGGGACAGGAAAAATCATGACGACCATTACCAAAGCCCAGGCGAATAAGCTGTTGCAGGTAGCGCTGTTTACCGCCGCC AACCGCAACCGCTCGTTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MDIDDADIAGKTPDELEALLAQAGSNEEDVSAGEGDPEPAIAPDTPASAGDVPPEAALASPAGEEPQDAAVTDPAAKVVL GKDGVHHIPYDVLQAAREQARRSAQSAQSAAEENAALKRTLTLLQQQVSRAGMQPATLPEETQISTEQLDKVRADFPELA EMFEQVVNQVNYLNARAKPSPSEDGGGINPVLEAIARNPDLAQWFDSDIDRRDFAITVDERLKTDPAWQDKTLDARFAEA ARRTKVAFGDPDVAVGATSAESLKKQAEEKLAAAAATPSVPSSPSDVGQPVTQSPQSVLDKAANASDGELLAMMAGMSES QIEALLSQAGDAF
Sequences:
>Translated_333_residues MDIDDADIAGKTPDELEALLAQAGSNEEDVSAGEGDPEPAIAPDTPASAGDVPPEAALASPAGEEPQDAAVTDPAAKVVL GKDGVHHIPYDVLQAAREQARRSAQSAQSAAEENAALKRTLTLLQQQVSRAGMQPATLPEETQISTEQLDKVRADFPELA EMFEQVVNQVNYLNARAKPSPSEDGGGINPVLEAIARNPDLAQWFDSDIDRRDFAITVDERLKTDPAWQDKTLDARFAEA ARRTKVAFGDPDVAVGATSAESLKKQAEEKLAAAAATPSVPSSPSDVGQPVTQSPQSVLDKAANASDGELLAMMAGMSES QIEALLSQAGDAF >Mature_333_residues MDIDDADIAGKTPDELEALLAQAGSNEEDVSAGEGDPEPAIAPDTPASAGDVPPEAALASPAGEEPQDAAVTDPAAKVVL GKDGVHHIPYDVLQAAREQARRSAQSAQSAAEENAALKRTLTLLQQQVSRAGMQPATLPEETQISTEQLDKVRADFPELA EMFEQVVNQVNYLNARAKPSPSEDGGGINPVLEAIARNPDLAQWFDSDIDRRDFAITVDERLKTDPAWQDKTLDARFAEA ARRTKVAFGDPDVAVGATSAESLKKQAEEKLAAAAATPSVPSSPSDVGQPVTQSPQSVLDKAANASDGELLAMMAGMSES QIEALLSQAGDAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34945; Mature: 34945
Theoretical pI: Translated: 3.99; Mature: 3.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIDDADIAGKTPDELEALLAQAGSNEEDVSAGEGDPEPAIAPDTPASAGDVPPEAALAS CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC PAGEEPQDAAVTDPAAKVVLGKDGVHHIPYDVLQAAREQARRSAQSAQSAAEENAALKRT CCCCCCCCCCCCCHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTLLQQQVSRAGMQPATLPEETQISTEQLDKVRADFPELAEMFEQVVNQVNYLNARAKPS HHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC PSEDGGGINPVLEAIARNPDLAQWFDSDIDRRDFAITVDERLKTDPAWQDKTLDARFAEA CCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEHHHHHCCCCCCCCCCHHHHHHHH ARRTKVAFGDPDVAVGATSAESLKKQAEEKLAAAAATPSVPSSPSDVGQPVTQSPQSVLD HHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHH KAANASDGELLAMMAGMSESQIEALLSQAGDAF HHCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCC >Mature Secondary Structure MDIDDADIAGKTPDELEALLAQAGSNEEDVSAGEGDPEPAIAPDTPASAGDVPPEAALAS CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC PAGEEPQDAAVTDPAAKVVLGKDGVHHIPYDVLQAAREQARRSAQSAQSAAEENAALKRT CCCCCCCCCCCCCHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTLLQQQVSRAGMQPATLPEETQISTEQLDKVRADFPELAEMFEQVVNQVNYLNARAKPS HHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC PSEDGGGINPVLEAIARNPDLAQWFDSDIDRRDFAITVDERLKTDPAWQDKTLDARFAEA CCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEHHHHHCCCCCCCCCCHHHHHHHH ARRTKVAFGDPDVAVGATSAESLKKQAEEKLAAAAATPSVPSSPSDVGQPVTQSPQSVLD HHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHH KAANASDGELLAMMAGMSESQIEALLSQAGDAF HHCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA