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The map label for this gene is ydcP [H]

Identifier: 238919860

GI number: 238919860

Start: 1893422

End: 1895386

Strand: Direct

Name: ydcP [H]

Synonym: NT01EI_1964

Alternate gene names: 238919860

Gene position: 1893422-1895386 (Clockwise)

Preceding gene: 238919857

Following gene: 238919861

Centisome position: 49.67

GC content: 56.79

Gene sequence:

>1965_bases
ATGCGCCAACCCATACACAAGCTTGAACTCCTCAGTCCCGCCCGCGAGGCGGCCATCGGCCGTGAGGCCATTTTGCACGG
TGCCGATGCAGTTTATATCGGTGGACCCAGTTTTGGCGCACGTCATAACGCCGGTAACTCCCTAAGTGATATTGCCGCTC
TGAGTGATTTTGCCCACCGCTATGGCGCTAAAATCTTCGTTACGCTCAATACAATACTGCACGATAATGAACTGGAACCA
GCGCGCCGCCTGATCCACCGTCTCTACGACGCAGGCGTGGATGCGCTGATCGTGCAGGACATGGGGATCCTGCAAATGGA
TATTCCCCCCATCGATCTGCATGCCAGTACCCAATGCGATATCCGCAGCGTAGAGAAGGCCCGCTTCCTGTCCCAGGCCG
GCTTTTCCCAGATTGTGTTAGCCCGCGAGCTGAGTCTGCCGCAGATCGCCGCCATCCGCGACAGTATTGATGCCAATATC
GAATTCTTCATTCACGGTGCGCTGTGCGTAGCCTATTCCGGGCAGTGCTATATCTCTCATGCCCAGACCGGGCGCAGCGC
TAACCGTGGTGACTGCTCTCAGGCCTGTCGTTTGCCCTATACCCTGAAAGATGAGCAGGGGCGCGTCGTTGCCTATGAGA
AGCATCTGCTGTCGCTTAAGGATAATGATCAAAGCGACAACCTGACGGCGCTGATCGATGCCGGGGTGCGCTCCTTTAAG
ATTGAGGGGCGTTATAAGGATATGAGCTATGTGAAAAATATCACGGCCTATTATCGTCAGCGACTGGATGTCATTCTGGA
TCAGCGCCCAGAGCTGTGCCGCGCCTCTCTTGGGCGCACCCGCCACTTTTTTACGCCGTCGCCTGACAAAACCTTTCACC
GCGGCAGCACCGACTACTTTGTGCGTGAGCGACAGATTGATATCGGCGCGTTTGAATCACCTAAATTTATCGGCGTTCCT
ATCGGTGAGGTAACCGCCGTTACCGCCGGGTACCTGGACGTCAGCGTCCGCGAGGCACTGCACAACGGCGATGGGCTGAA
TGTACAGGTGAAGCGAGACATCGTTGGGCTGCGCGCCAATACGGTAGAGGCGCAGGGTAAGGGGCGCTATCGTATCTGGC
CGAACGAAATGCCGCCGACGCTGGCTACGCTGAGGTTGCCTCATCCTCTGAACCGTAATTTGGATCACGACTGGCAGCAG
GCGCTGCTGAAGAGCTCCAGCGAGCGCCGCATCGGTCTTAGGCTGTGTTTAAGCGGCTCGGCCCAGCAGCTGCAGCTGAC
GCTCACCAGCGAAGATGGCGTCAGCGTTAACCAATTCCTGGAAGGCCACTTTGAACCGGCACGTCAGGCCGATCGCGCGC
TGCAGGGACTGCGCGAGGGGCTAAGCAAGTTGGGGCAAACCCTATATCAGGCTGATGAGGTCGAGATTGCGCTGGCAGAA
CCCTATTTTATCCCCAACAGCCAGCTGAACCAGCTGCGCCGCGAAGCCATTGAGCAGCTGGATCAAGCCCGGGCCCGCCA
GGACAACCGTCTGCAGCGCAGAGCGCCAATAATGCCACCACCGCAGTATCCGCAGAGCCATCTGACCTATCTGGATAATG
TGTATAACCGCCTGGCCCGTGAGTTTTATCACCGGCATGGCGTCACCCTGATCGACGCCGCCTATGAGGCGCACACGGAG
AAGGGCGAGGTTCCGGTGATGATCACCAAGCACTGCCTGCGCTTTGCGTTTAATCTCTGTCCCAAGCAGGCTAAAGGGAT
CCAGGGCGTGAAGGGAAGGGCGTCGCCAATGCAGTTGGTGTGCCAGGATGAGCTACTGACGCTGAAGTTTGACTGTAAAC
ACTGTGAAATGCAGGTTATTGGCAAGATTAAACCCCACGTGCTTAAAATGGCACTGCCGGGCAGCGTATTGGGCGCCATT
ACACCGGATGAGCTGCTAAAAACCCTGCCAGGAAAGAAAATATAA

Upstream 100 bases:

>100_bases
AGCGTCGGCGATACGGATAAGAAATTCACACCGCCAGCCTTGTAACTGTGCCCGGCGCGACTACAATAGCGCCGTTTCAG
AGACTAACCACGGTAACCGC

Downstream 100 bases:

>100_bases
TCCTGAAGTATCCGCAAAATAACCGAGTTGTGCCATTTCTCTTTACCCTCTGGCGGGAGATATCTCCCGCCAAAAATGCG
ATCTGACTTGTATTTCTGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 654; Mature: 654

Protein sequence:

>654_residues
MRQPIHKLELLSPAREAAIGREAILHGADAVYIGGPSFGARHNAGNSLSDIAALSDFAHRYGAKIFVTLNTILHDNELEP
ARRLIHRLYDAGVDALIVQDMGILQMDIPPIDLHASTQCDIRSVEKARFLSQAGFSQIVLARELSLPQIAAIRDSIDANI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDEQGRVVAYEKHLLSLKDNDQSDNLTALIDAGVRSFK
IEGRYKDMSYVKNITAYYRQRLDVILDQRPELCRASLGRTRHFFTPSPDKTFHRGSTDYFVRERQIDIGAFESPKFIGVP
IGEVTAVTAGYLDVSVREALHNGDGLNVQVKRDIVGLRANTVEAQGKGRYRIWPNEMPPTLATLRLPHPLNRNLDHDWQQ
ALLKSSSERRIGLRLCLSGSAQQLQLTLTSEDGVSVNQFLEGHFEPARQADRALQGLREGLSKLGQTLYQADEVEIALAE
PYFIPNSQLNQLRREAIEQLDQARARQDNRLQRRAPIMPPPQYPQSHLTYLDNVYNRLAREFYHRHGVTLIDAAYEAHTE
KGEVPVMITKHCLRFAFNLCPKQAKGIQGVKGRASPMQLVCQDELLTLKFDCKHCEMQVIGKIKPHVLKMALPGSVLGAI
TPDELLKTLPGKKI

Sequences:

>Translated_654_residues
MRQPIHKLELLSPAREAAIGREAILHGADAVYIGGPSFGARHNAGNSLSDIAALSDFAHRYGAKIFVTLNTILHDNELEP
ARRLIHRLYDAGVDALIVQDMGILQMDIPPIDLHASTQCDIRSVEKARFLSQAGFSQIVLARELSLPQIAAIRDSIDANI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDEQGRVVAYEKHLLSLKDNDQSDNLTALIDAGVRSFK
IEGRYKDMSYVKNITAYYRQRLDVILDQRPELCRASLGRTRHFFTPSPDKTFHRGSTDYFVRERQIDIGAFESPKFIGVP
IGEVTAVTAGYLDVSVREALHNGDGLNVQVKRDIVGLRANTVEAQGKGRYRIWPNEMPPTLATLRLPHPLNRNLDHDWQQ
ALLKSSSERRIGLRLCLSGSAQQLQLTLTSEDGVSVNQFLEGHFEPARQADRALQGLREGLSKLGQTLYQADEVEIALAE
PYFIPNSQLNQLRREAIEQLDQARARQDNRLQRRAPIMPPPQYPQSHLTYLDNVYNRLAREFYHRHGVTLIDAAYEAHTE
KGEVPVMITKHCLRFAFNLCPKQAKGIQGVKGRASPMQLVCQDELLTLKFDCKHCEMQVIGKIKPHVLKMALPGSVLGAI
TPDELLKTLPGKKI
>Mature_654_residues
MRQPIHKLELLSPAREAAIGREAILHGADAVYIGGPSFGARHNAGNSLSDIAALSDFAHRYGAKIFVTLNTILHDNELEP
ARRLIHRLYDAGVDALIVQDMGILQMDIPPIDLHASTQCDIRSVEKARFLSQAGFSQIVLARELSLPQIAAIRDSIDANI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDEQGRVVAYEKHLLSLKDNDQSDNLTALIDAGVRSFK
IEGRYKDMSYVKNITAYYRQRLDVILDQRPELCRASLGRTRHFFTPSPDKTFHRGSTDYFVRERQIDIGAFESPKFIGVP
IGEVTAVTAGYLDVSVREALHNGDGLNVQVKRDIVGLRANTVEAQGKGRYRIWPNEMPPTLATLRLPHPLNRNLDHDWQQ
ALLKSSSERRIGLRLCLSGSAQQLQLTLTSEDGVSVNQFLEGHFEPARQADRALQGLREGLSKLGQTLYQADEVEIALAE
PYFIPNSQLNQLRREAIEQLDQARARQDNRLQRRAPIMPPPQYPQSHLTYLDNVYNRLAREFYHRHGVTLIDAAYEAHTE
KGEVPVMITKHCLRFAFNLCPKQAKGIQGVKGRASPMQLVCQDELLTLKFDCKHCEMQVIGKIKPHVLKMALPGSVLGAI
TPDELLKTLPGKKI

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=649, Percent_Identity=71.9568567026194, Blast_Score=969, Evalue=0.0,
Organism=Escherichia coli, GI1788397, Length=438, Percent_Identity=28.0821917808219, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1789548, Length=293, Percent_Identity=29.0102389078498, Blast_Score=101, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 73207; Mature: 73207

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQPIHKLELLSPAREAAIGREAILHGADAVYIGGPSFGARHNAGNSLSDIAALSDFAHR
CCCCHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
YGAKIFVTLNTILHDNELEPARRLIHRLYDAGVDALIVQDMGILQMDIPPIDLHASTQCD
CCCEEEEEEEEHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCCCCC
IRSVEKARFLSQAGFSQIVLARELSLPQIAAIRDSIDANIEFFIHGALCVAYSGQCYISH
HHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEEEEEEEECCCEEEEE
AQTGRSANRGDCSQACRLPYTLKDEQGRVVAYEKHLLSLKDNDQSDNLTALIDAGVRSFK
CCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEEHHEEECCCCCCCCCEEEEEECCCEEEE
IEGRYKDMSYVKNITAYYRQRLDVILDQRPELCRASLGRTRHFFTPSPDKTFHRGSTDYF
ECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE
VRERQIDIGAFESPKFIGVPIGEVTAVTAGYLDVSVREALHNGDGLNVQVKRDIVGLRAN
EEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCC
TVEAQGKGRYRIWPNEMPPTLATLRLPHPLNRNLDHDWQQALLKSSSERRIGLRLCLSGS
EEECCCCCCEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCC
AQQLQLTLTSEDGVSVNQFLEGHFEPARQADRALQGLREGLSKLGQTLYQADEVEIALAE
CEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
PYFIPNSQLNQLRREAIEQLDQARARQDNRLQRRAPIMPPPQYPQSHLTYLDNVYNRLAR
CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
EFYHRHGVTLIDAAYEAHTEKGEVPVMITKHCLRFAFNLCPKQAKGIQGVKGRASPMQLV
HHHHHCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHEE
CQDELLTLKFDCKHCEMQVIGKIKPHVLKMALPGSVLGAITPDELLKTLPGKKI
ECCCEEEEEECCCCCCHHHHCCCCCHHEEEECCCHHHCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MRQPIHKLELLSPAREAAIGREAILHGADAVYIGGPSFGARHNAGNSLSDIAALSDFAHR
CCCCHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
YGAKIFVTLNTILHDNELEPARRLIHRLYDAGVDALIVQDMGILQMDIPPIDLHASTQCD
CCCEEEEEEEEHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCCCCC
IRSVEKARFLSQAGFSQIVLARELSLPQIAAIRDSIDANIEFFIHGALCVAYSGQCYISH
HHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEEEEEEEECCCEEEEE
AQTGRSANRGDCSQACRLPYTLKDEQGRVVAYEKHLLSLKDNDQSDNLTALIDAGVRSFK
CCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEEHHEEECCCCCCCCCEEEEEECCCEEEE
IEGRYKDMSYVKNITAYYRQRLDVILDQRPELCRASLGRTRHFFTPSPDKTFHRGSTDYF
ECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE
VRERQIDIGAFESPKFIGVPIGEVTAVTAGYLDVSVREALHNGDGLNVQVKRDIVGLRAN
EEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCC
TVEAQGKGRYRIWPNEMPPTLATLRLPHPLNRNLDHDWQQALLKSSSERRIGLRLCLSGS
EEECCCCCCEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCC
AQQLQLTLTSEDGVSVNQFLEGHFEPARQADRALQGLREGLSKLGQTLYQADEVEIALAE
CEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
PYFIPNSQLNQLRREAIEQLDQARARQDNRLQRRAPIMPPPQYPQSHLTYLDNVYNRLAR
CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
EFYHRHGVTLIDAAYEAHTEKGEVPVMITKHCLRFAFNLCPKQAKGIQGVKGRASPMQLV
HHHHHCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHEE
CQDELLTLKFDCKHCEMQVIGKIKPHVLKMALPGSVLGAITPDELLKTLPGKKI
ECCCEEEEEECCCCCCHHHHCCCCCHHEEEECCCHHHCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]