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The map label for this gene is ydgD [H]

Identifier: 238919839

GI number: 238919839

Start: 1872747

End: 1873559

Strand: Reverse

Name: ydgD [H]

Synonym: NT01EI_1943

Alternate gene names: 238919839

Gene position: 1873559-1872747 (Counterclockwise)

Preceding gene: 238919842

Following gene: 238919834

Centisome position: 49.14

GC content: 62.24

Gene sequence:

>813_bases
ATGCGCTTCCCTGCCCTTTTGAGTATTACGCTGTTATTGACTCTCTGGCTACCGTACGCCGCCCTGGCAGATGATGGGTT
AACCCCCTATCAGCAGCGGCAGCTGTTTTTTGGTCACGACGATCGCGATCGTGTCAGTGAGGTTAATGACTGGCCGTGGA
ATGCCATCGGTCAGGTTGAAACCGCCAGCGGCAATCTGTGTACCGCCACTCTGATAGCACCGCGCTGGGCGCTGACGGCG
GGCCACTGCCTGCTGGCGCCGCCAGGGAAAACCGATCGCGCCGTGGCGCTGCGCTTTATGTCTCATGACGGCAAGTGGCG
CTATCAGTCACGTCATCTACAGACGCAGGTCAATCCGCAGTTGCATAAAAAGCTCAAGGCCGATGGTGATGGCTGGATCG
TTCCACCTACGGCGGCGCCGCAGGATTATGGATTGGTGGAAATCACGGCGGGTCCCCTGCCCGATCTGCGTCCACTGCCG
GTATGGCAAGGGACGCCGAAAGCGCTGAGCGCGGCGCTGAAGGCGCAGCGTCGACAGGTCACCCAGGCTGGCTATCCGCA
GGATCATCTGGATATTCTCTATCGCCACCGCGACTGCCTCATCACCGGGTGGGCTCAGAGCGGTGTGCTGAGCCACCGCT
GTGATACGCTGCCGGGCGACAGCGGATCACCGCTGCTGATGCGTCAGGCGACCGGATGGACGCTGGTCGCGATCCAAAGC
TCGGCGCCGGCGGCAGAAAACCGGGCGCTGGCCGATAACCGCGCCGTCGCCGTTACCGCGATTAACGCGGGGCTGCAGCG
CCTGATGCACTGA

Upstream 100 bases:

>100_bases
GCAGCCTGTTTTTATGTTTAGCTGCATCAGATGACGTGCATAGTGCACCGTCGATTGACTACACTGTTGATAAATAACAC
GACGATTCACGGAATTAACC

Downstream 100 bases:

>100_bases
TGCCCCGGGCGGCGTGGCTATGGCTGCTCCGCCGCCTCCATCGCCTGCAGGATACGCTTGTCTGACACCGGATAGGGCGT
ACCCAGCTGCTGGGCAAAAT

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRFPALLSITLLLTLWLPYAALADDGLTPYQQRQLFFGHDDRDRVSEVNDWPWNAIGQVETASGNLCTATLIAPRWALTA
GHCLLAPPGKTDRAVALRFMSHDGKWRYQSRHLQTQVNPQLHKKLKADGDGWIVPPTAAPQDYGLVEITAGPLPDLRPLP
VWQGTPKALSAALKAQRRQVTQAGYPQDHLDILYRHRDCLITGWAQSGVLSHRCDTLPGDSGSPLLMRQATGWTLVAIQS
SAPAAENRALADNRAVAVTAINAGLQRLMH

Sequences:

>Translated_270_residues
MRFPALLSITLLLTLWLPYAALADDGLTPYQQRQLFFGHDDRDRVSEVNDWPWNAIGQVETASGNLCTATLIAPRWALTA
GHCLLAPPGKTDRAVALRFMSHDGKWRYQSRHLQTQVNPQLHKKLKADGDGWIVPPTAAPQDYGLVEITAGPLPDLRPLP
VWQGTPKALSAALKAQRRQVTQAGYPQDHLDILYRHRDCLITGWAQSGVLSHRCDTLPGDSGSPLLMRQATGWTLVAIQS
SAPAAENRALADNRAVAVTAINAGLQRLMH
>Mature_270_residues
MRFPALLSITLLLTLWLPYAALADDGLTPYQQRQLFFGHDDRDRVSEVNDWPWNAIGQVETASGNLCTATLIAPRWALTA
GHCLLAPPGKTDRAVALRFMSHDGKWRYQSRHLQTQVNPQLHKKLKADGDGWIVPPTAAPQDYGLVEITAGPLPDLRPLP
VWQGTPKALSAALKAQRRQVTQAGYPQDHLDILYRHRDCLITGWAQSGVLSHRCDTLPGDSGSPLLMRQATGWTLVAIQS
SAPAAENRALADNRAVAVTAINAGLQRLMH

Specific function: Unknown

COG id: COG3591

COG function: function code E; V8-like Glu-specific endopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

Organism=Escherichia coli, GI1787882, Length=235, Percent_Identity=61.2765957446808, Blast_Score=285, Evalue=2e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR018114
- InterPro:   IPR001254
- InterPro:   IPR008256 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 29680; Mature: 29680

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS00134 TRYPSIN_HIS ; PS00135 TRYPSIN_SER ; PS50240 TRYPSIN_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFPALLSITLLLTLWLPYAALADDGLTPYQQRQLFFGHDDRDRVSEVNDWPWNAIGQVE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCEEECCCCCHHHHHCCCCCCCCCCCCEE
TASGNLCTATLIAPRWALTAGHCLLAPPGKTDRAVALRFMSHDGKWRYQSRHLQTQVNPQ
ECCCCEEEEEEECCCHHHCCCCEEECCCCCCCHHEEEEEECCCCCEEECCCCCCCCCCHH
LHKKLKADGDGWIVPPTAAPQDYGLVEITAGPLPDLRPLPVWQGTPKALSAALKAQRRQV
HHHHHCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
TQAGYPQDHLDILYRHRDCLITGWAQSGVLSHRCDTLPGDSGSPLLMRQATGWTLVAIQS
HHCCCCHHHHHHHHHCCCEEEECCHHCCCHHHCCCCCCCCCCCCEEEEECCCEEEEEEEC
SAPAAENRALADNRAVAVTAINAGLQRLMH
CCCCCCCCCCCCCCEEEEEEHHHHHHHHCC
>Mature Secondary Structure
MRFPALLSITLLLTLWLPYAALADDGLTPYQQRQLFFGHDDRDRVSEVNDWPWNAIGQVE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCEEECCCCCHHHHHCCCCCCCCCCCCEE
TASGNLCTATLIAPRWALTAGHCLLAPPGKTDRAVALRFMSHDGKWRYQSRHLQTQVNPQ
ECCCCEEEEEEECCCHHHCCCCEEECCCCCCCHHEEEEEECCCCCEEECCCCCCCCCCHH
LHKKLKADGDGWIVPPTAAPQDYGLVEITAGPLPDLRPLPVWQGTPKALSAALKAQRRQV
HHHHHCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
TQAGYPQDHLDILYRHRDCLITGWAQSGVLSHRCDTLPGDSGSPLLMRQATGWTLVAIQS
HHCCCCHHHHHHHHHCCCEEEECCHHCCCHHHCCCCCCCCCCCCEEEEECCCEEEEEEEC
SAPAAENRALADNRAVAVTAINAGLQRLMH
CCCCCCCCCCCCCCEEEEEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]