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The map label for this gene is nlpC [H]

Identifier: 238919797

GI number: 238919797

Start: 1829870

End: 1830238

Strand: Direct

Name: nlpC [H]

Synonym: NT01EI_1901

Alternate gene names: 238919797

Gene position: 1829870-1830238 (Clockwise)

Preceding gene: 238919791

Following gene: 238919798

Centisome position: 48.0

GC content: 56.91

Gene sequence:

>369_bases
GTGGTGGTAGCGCAACTCAATGATCAACTGCAGCAGTGGCATGGTTCGCCATATCGCTATGGCGGAATGGCGCGTAGCGG
TGTTGACTGCTCCGGCTTTGTGTACCGAACCTTCCGCGATCGCTTTGCCATTCAGCTGCCGCGGACGACACAGGAGCAAA
CCTCGCTGGGTACCCGGGTATCGCGGGACGATCTGTTACCCGGCGATCTGGTGTTTTTCCGCACCGGAAGCGGTGATAAC
GGTCTGCATGTCGGTATTTATGATACCAATGATACGTTTATCCACGCGTCGACCTCGCAAGGGGTAACGCGATCGTCGCT
GAACAACGTCTACTGGCGTAATGCCTACTGGCAGGCCCGGCGTCTATAG

Upstream 100 bases:

>100_bases
ATACCGCTATTGTGCATGGTGTAGCGTTGCACTGATTCTGGCAGGATGTAGCAGCAAACACCGTGCACCGCCACCATCTG
GCCGTCTGGCAGACCCGATA

Downstream 100 bases:

>100_bases
CCTCCGCTGCGGGCTCTTATCTGCGCAGTGGCAGTGCTATCATCATGACTTTAGCTCAGTAAAAAGGCATGGTTATGACG
CCGTTATCGCTTTTTATCTC

Product: NlpC

Products: NA

Alternate protein names: ORF-17 [H]

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MVVAQLNDQLQQWHGSPYRYGGMARSGVDCSGFVYRTFRDRFAIQLPRTTQEQTSLGTRVSRDDLLPGDLVFFRTGSGDN
GLHVGIYDTNDTFIHASTSQGVTRSSLNNVYWRNAYWQARRL

Sequences:

>Translated_122_residues
MVVAQLNDQLQQWHGSPYRYGGMARSGVDCSGFVYRTFRDRFAIQLPRTTQEQTSLGTRVSRDDLLPGDLVFFRTGSGDN
GLHVGIYDTNDTFIHASTSQGVTRSSLNNVYWRNAYWQARRL
>Mature_122_residues
MVVAQLNDQLQQWHGSPYRYGGMARSGVDCSGFVYRTFRDRFAIQLPRTTQEQTSLGTRVSRDDLLPGDLVFFRTGSGDN
GLHVGIYDTNDTFIHASTSQGVTRSSLNNVYWRNAYWQARRL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788001, Length=121, Percent_Identity=72.7272727272727, Blast_Score=196, Evalue=3e-52,
Organism=Escherichia coli, GI1788501, Length=121, Percent_Identity=52.8925619834711, Blast_Score=134, Evalue=2e-33,
Organism=Escherichia coli, GI1787944, Length=119, Percent_Identity=42.0168067226891, Blast_Score=89, Evalue=7e-20,
Organism=Escherichia coli, GI1786421, Length=118, Percent_Identity=33.8983050847458, Blast_Score=66, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 13897; Mature: 13897

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVAQLNDQLQQWHGSPYRYGGMARSGVDCSGFVYRTFRDRFAIQLPRTTQEQTSLGTRV
CEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCHHHHCCCCC
SRDDLLPGDLVFFRTGSGDNGLHVGIYDTNDTFIHASTSQGVTRSSLNNVYWRNAYWQAR
CCCCCCCCCEEEEEECCCCCCEEEEEEECCCCEEEECCCCCCCHHHCCCEEECCCEEEEC
RL
CC
>Mature Secondary Structure
MVVAQLNDQLQQWHGSPYRYGGMARSGVDCSGFVYRTFRDRFAIQLPRTTQEQTSLGTRV
CEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCHHHHCCCCC
SRDDLLPGDLVFFRTGSGDNGLHVGIYDTNDTFIHASTSQGVTRSSLNNVYWRNAYWQAR
CCCCCCCCCEEEEEECCCCCCEEEEEEECCCCEEEECCCCCCCHHHCCCEEECCCEEEEC
RL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]