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The map label for this gene is infC [H]

Identifier: 238919783

GI number: 238919783

Start: 1817705

End: 1818163

Strand: Direct

Name: infC [H]

Synonym: NT01EI_1887

Alternate gene names: 238919783

Gene position: 1817705-1818163 (Clockwise)

Preceding gene: 238919782

Following gene: 238919784

Centisome position: 47.68

GC content: 51.63

Gene sequence:

>459_bases
GTGGATGGCGAGCAGATTGGTATTGTCAGTCTGAGAGAAGCTCTTGAGAAGGCCGAGGAAGCTGGCGTCGACCTGGTCGA
AATCAGCCCCAACGCTGAACCGCCGGTTTGTCGTATCATGGATTACGGCAAATTCCTCTATGAGAAGAGTAAGGCTAGCA
AAGAGCAGAAGAAAAAACAGAAAGTTGTCCAGGTTAAGGAAATCAAATTCCGTCCTGGCACCGATGATGGCGACTACCAG
GTAAAACTCCGCAGCCTGGTTCGCTTTCTGGAAGATGGCGATAAGGCCAAGATCACGCTGCGTTTTCGCGGTCGTGAGAT
GGCGCACCAACAGATCGGTATTGAGGTGCTTAACCGCGTCAAGAACGATCTGAGTGAACTGGCGGTAGTCGAGTCCTTCC
CTTCGAAGATCGAAGGCCGCCAGATGATCATGGTGCTCGCTCCCAAGAAGAAACAGTAA

Upstream 100 bases:

>100_bases
GTTGGAGGAATAAGGTATTAAAGGCGGAAAACGAGTTCAAACGGCGCGTCCTAATCGTATTAACGGGGAAATTCGCGCCC
AAGAGGTTCGCTTGACAGGT

Downstream 100 bases:

>100_bases
GGCTATCAAGTAAGGGTTCTACGGTTCGGGTTTCCCGACCGTAGAATCGTTCGCCTAACTGATTCGTTGTAATTAACAAT
GCGAAGTGGAAATCGAAATG

Product: translation initiation factor IF-3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MDGEQIGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKASKEQKKKQKVVQVKEIKFRPGTDDGDYQ
VKLRSLVRFLEDGDKAKITLRFRGREMAHQQIGIEVLNRVKNDLSELAVVESFPSKIEGRQMIMVLAPKKKQ

Sequences:

>Translated_152_residues
MDGEQIGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKASKEQKKKQKVVQVKEIKFRPGTDDGDYQ
VKLRSLVRFLEDGDKAKITLRFRGREMAHQQIGIEVLNRVKNDLSELAVVESFPSKIEGRQMIMVLAPKKKQ
>Mature_152_residues
MDGEQIGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKASKEQKKKQKVVQVKEIKFRPGTDDGDYQ
VKLRSLVRFLEDGDKAKITLRFRGREMAHQQIGIEVLNRVKNDLSELAVVESFPSKIEGRQMIMVLAPKKKQ

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins [H]

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family [H]

Homologues:

Organism=Escherichia coli, GI1788012, Length=152, Percent_Identity=92.1052631578947, Blast_Score=262, Evalue=6e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019813
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814 [H]

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N [H]

EC number: NA

Molecular weight: Translated: 17303; Mature: 17303

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGEQIGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKASKEQKKKQ
CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KVVQVKEIKFRPGTDDGDYQVKLRSLVRFLEDGDKAKITLRFRGREMAHQQIGIEVLNRV
HHHHHHHEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHH
KNDLSELAVVESFPSKIEGRQMIMVLAPKKKQ
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
>Mature Secondary Structure
MDGEQIGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKASKEQKKKQ
CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KVVQVKEIKFRPGTDDGDYQVKLRSLVRFLEDGDKAKITLRFRGREMAHQQIGIEVLNRV
HHHHHHHEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHH
KNDLSELAVVESFPSKIEGRQMIMVLAPKKKQ
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8405963 [H]