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The map label for this gene is dppB [C]

Identifier: 238919643

GI number: 238919643

Start: 1696197

End: 1697171

Strand: Reverse

Name: dppB [C]

Synonym: NT01EI_1744

Alternate gene names: 238919643

Gene position: 1697171-1696197 (Counterclockwise)

Preceding gene: 238919644

Following gene: 238919642

Centisome position: 44.52

GC content: 63.28

Gene sequence:

>975_bases
ATGATGCGTCTGCTTGCCCCACTGCTGCGGCTGGCTTTACTTCTGGTGCTGGTGGCTGCTGGCACCTTTTTACTGCTCAG
CTTTTCACCGGTCGATCCCATCCGGGCCTATATCGGTAACGATCTGCTGCACGTTCCACCGCAGCAGTACGCCCGGATCG
CTGCCCGCTGGGGGCTGGATCAGCCGCTGTGGCAACGCTTTGGCCACTGGTTCATGCGTCTGCTGCAGGGTGACCTTGGT
TACTCCATGCTGTTTAACGCCCCGGTCGCCAGCGTGATCGGAGAGCGCTTTGTCACCTCATTCGCCCTGCTCGCCGGCGC
CTGGGTGCTTTCCGGCTTCTCCGGCATCGGGCTGGGCTGCCTGGCCGGTCGTTACCTGAATCGCTGGCCAGATCGACTGA
TCTGCCGCCTGAGCTACCTGCTATCCTCTCTGCCGACCTTCTGGATAGCGCTGCTGCTACTGGCACTCTTTGCCGTGTAC
TGGCCACTGCTGCCGGTATGCTGCGCCTGGGAGCCCGGCGGCAATGCCGCCAGCGCAGGCTGGTCCGAACGACTGCGCCA
TCTGGTACTGCCGGTCTGCGCCCTCAGCCTGCTGGGGATGGGGCAAATCGCCCTGCATACCCGGGAGAAAATCGCCAGCG
TCATGGCCAGCGACTTTGTCCGCTTTGCCCGTGCGCAAGGCGATCGCGGCTGGTCGCTGCTGCATAGTCAGGTACTGCGT
CACGCGCTCACTCCGGCGCTGTGCCTGCAGTTTGCCTCTCTGGGCGAGCTGCTCGGCGGCGCCCTGCTGGCAGAAAAGGT
ATTTGCCTATCCCGGGCTGGGGCAGGCGACGATCGACGCCGGTCTGCGCGGTGATGTTCCCCTGCTGATGGGAATCGTCC
TGTTCAGTACCCTGCTGGTCTTTATCGGCAATAGCCTATCGGCCTGGCTGATCCGCCGCATGAACCGCGCTCTGGAGCGA
CCCGATGCTGTATAA

Upstream 100 bases:

>100_bases
TGGCCAACCCCTGCATCAATCTGGGTAAAGGTGCTCCTGAGATTCACGGCAGCTGGTCGCTGTTGAACAATCTGGATGAC
TGGACCTGGACCTGCCGTTA

Downstream 100 bases:

>100_bases
CCCTGCCCCTACGCTGGCGCGTCTGTTTATCGCCTCATTTTTGCTGCTGCTGATCGCCGGATATGCCTCTACCTCACTGG
ATCAGGCGCTGACGATCGAC

Product: hypothetical protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MMRLLAPLLRLALLLVLVAAGTFLLLSFSPVDPIRAYIGNDLLHVPPQQYARIAARWGLDQPLWQRFGHWFMRLLQGDLG
YSMLFNAPVASVIGERFVTSFALLAGAWVLSGFSGIGLGCLAGRYLNRWPDRLICRLSYLLSSLPTFWIALLLLALFAVY
WPLLPVCCAWEPGGNAASAGWSERLRHLVLPVCALSLLGMGQIALHTREKIASVMASDFVRFARAQGDRGWSLLHSQVLR
HALTPALCLQFASLGELLGGALLAEKVFAYPGLGQATIDAGLRGDVPLLMGIVLFSTLLVFIGNSLSAWLIRRMNRALER
PDAV

Sequences:

>Translated_324_residues
MMRLLAPLLRLALLLVLVAAGTFLLLSFSPVDPIRAYIGNDLLHVPPQQYARIAARWGLDQPLWQRFGHWFMRLLQGDLG
YSMLFNAPVASVIGERFVTSFALLAGAWVLSGFSGIGLGCLAGRYLNRWPDRLICRLSYLLSSLPTFWIALLLLALFAVY
WPLLPVCCAWEPGGNAASAGWSERLRHLVLPVCALSLLGMGQIALHTREKIASVMASDFVRFARAQGDRGWSLLHSQVLR
HALTPALCLQFASLGELLGGALLAEKVFAYPGLGQATIDAGLRGDVPLLMGIVLFSTLLVFIGNSLSAWLIRRMNRALER
PDAV
>Mature_324_residues
MMRLLAPLLRLALLLVLVAAGTFLLLSFSPVDPIRAYIGNDLLHVPPQQYARIAARWGLDQPLWQRFGHWFMRLLQGDLG
YSMLFNAPVASVIGERFVTSFALLAGAWVLSGFSGIGLGCLAGRYLNRWPDRLICRLSYLLSSLPTFWIALLLLALFAVY
WPLLPVCCAWEPGGNAASAGWSERLRHLVLPVCALSLLGMGQIALHTREKIASVMASDFVRFARAQGDRGWSLLHSQVLR
HALTPALCLQFASLGELLGGALLAEKVFAYPGLGQATIDAGLRGDVPLLMGIVLFSTLLVFIGNSLSAWLIRRMNRALER
PDAV

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=308, Percent_Identity=29.5454545454545, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787053, Length=298, Percent_Identity=32.2147651006711, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1789888, Length=300, Percent_Identity=28.3333333333333, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1787761, Length=297, Percent_Identity=32.3232323232323, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787497, Length=291, Percent_Identity=28.1786941580756, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787550, Length=266, Percent_Identity=29.3233082706767, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788504, Length=276, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35546; Mature: 35546

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRLLAPLLRLALLLVLVAAGTFLLLSFSPVDPIRAYIGNDLLHVPPQQYARIAARWGLD
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
QPLWQRFGHWFMRLLQGDLGYSMLFNAPVASVIGERFVTSFALLAGAWVLSGFSGIGLGC
HHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LAGRYLNRWPDRLICRLSYLLSSLPTFWIALLLLALFAVYWPLLPVCCAWEPGGNAASAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
WSERLRHLVLPVCALSLLGMGQIALHTREKIASVMASDFVRFARAQGDRGWSLLHSQVLR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
HALTPALCLQFASLGELLGGALLAEKVFAYPGLGQATIDAGLRGDVPLLMGIVLFSTLLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH
FIGNSLSAWLIRRMNRALERPDAV
HHCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MMRLLAPLLRLALLLVLVAAGTFLLLSFSPVDPIRAYIGNDLLHVPPQQYARIAARWGLD
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
QPLWQRFGHWFMRLLQGDLGYSMLFNAPVASVIGERFVTSFALLAGAWVLSGFSGIGLGC
HHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LAGRYLNRWPDRLICRLSYLLSSLPTFWIALLLLALFAVYWPLLPVCCAWEPGGNAASAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
WSERLRHLVLPVCALSLLGMGQIALHTREKIASVMASDFVRFARAQGDRGWSLLHSQVLR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
HALTPALCLQFASLGELLGGALLAEKVFAYPGLGQATIDAGLRGDVPLLMGIVLFSTLLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH
FIGNSLSAWLIRRMNRALERPDAV
HHCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]