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The map label for this gene is yddQ [C]

Identifier: 238919642

GI number: 238919642

Start: 1695395

End: 1696207

Strand: Reverse

Name: yddQ [C]

Synonym: NT01EI_1743

Alternate gene names: 238919642

Gene position: 1696207-1695395 (Counterclockwise)

Preceding gene: 238919643

Following gene: 238919641

Centisome position: 44.49

GC content: 63.22

Gene sequence:

>813_bases
ATGCTGTATAACCCTGCCCCTACGCTGGCGCGTCTGTTTATCGCCTCATTTTTGCTGCTGCTGATCGCCGGATATGCCTC
TACCTCACTGGATCAGGCGCTGACGATCGACCTGCTGGCACGCCATCAGCCACCCAGCGCCCTCCACTGGTTCGGAACTG
ACAATATGGGGCGCGACCTGTGGCTACGCAGCTTTCAGGGCGCCCTCACCAGCCTGCAAATCGGGACCGGTGCCGCGCTG
TGCAGCGGGATTATCGCGCTCCTGATGGCGGCCTTATCCCAGCTGCACCCGCGCCTGGATACCCTGATGCGTCTGCTCAC
CGACACCATGCTCGCACTGCCGCACCTGCTGTTGCTGATCCTGATCTGCTTTACCCTCGGCGGCGGCAAGAGCGGCGTCA
TCATGGCCGTCGCTCTGACGCACTGGCCGCGCCTGGCGCTGATCCTACGCGCCGAGGCTCAGCGCATAGCACACAGCGAC
TACCTGACGCTGGCCCGCTGTATCGGCAACGGCCCGCTCTACTGCTGGCGTCACCACTATCTCCTGGCCCTGCTGCCGCA
GTGGCTCACCGGAACCCTGCTGATGTTTCCGCACGCCGTGTTGCACAGCGCGGCGCTCAGCTTCCTGGGCTTTGGCCTGG
CACCGCATGAGCCGTCGCTGGGGCTACTGCTGGCCGATGCACTGCGTTTCATCAGCCACGGTAACTGGTGGCTGGTATTG
TTTCCCGGCCTGATGCTGCTACTGCTGGTGCTGCTGTTCGATCAGTTTGCCCGCGCCCTGCAGCGACTGTGGCTAAGGAG
TGAGTCATGCTAA

Upstream 100 bases:

>100_bases
CTGATGGGAATCGTCCTGTTCAGTACCCTGCTGGTCTTTATCGGCAATAGCCTATCGGCCTGGCTGATCCGCCGCATGAA
CCGCGCTCTGGAGCGACCCG

Downstream 100 bases:

>100_bases
GTTTTCACAACATCACCCTGGAGGCAGCCCACTACCGCTGGTATGGCGCCCGTTGCTGGTCTCCCCTGCTACAGGGAATA
ACCCTCGACGTCGCGCCCGG

Product: peptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MLYNPAPTLARLFIASFLLLLIAGYASTSLDQALTIDLLARHQPPSALHWFGTDNMGRDLWLRSFQGALTSLQIGTGAAL
CSGIIALLMAALSQLHPRLDTLMRLLTDTMLALPHLLLLILICFTLGGGKSGVIMAVALTHWPRLALILRAEAQRIAHSD
YLTLARCIGNGPLYCWRHHYLLALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADALRFISHGNWWLVL
FPGLMLLLLVLLFDQFARALQRLWLRSESC

Sequences:

>Translated_270_residues
MLYNPAPTLARLFIASFLLLLIAGYASTSLDQALTIDLLARHQPPSALHWFGTDNMGRDLWLRSFQGALTSLQIGTGAAL
CSGIIALLMAALSQLHPRLDTLMRLLTDTMLALPHLLLLILICFTLGGGKSGVIMAVALTHWPRLALILRAEAQRIAHSD
YLTLARCIGNGPLYCWRHHYLLALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADALRFISHGNWWLVL
FPGLMLLLLVLLFDQFARALQRLWLRSESC
>Mature_270_residues
MLYNPAPTLARLFIASFLLLLIAGYASTSLDQALTIDLLARHQPPSALHWFGTDNMGRDLWLRSFQGALTSLQIGTGAAL
CSGIIALLMAALSQLHPRLDTLMRLLTDTMLALPHLLLLILICFTLGGGKSGVIMAVALTHWPRLALILRAEAQRIAHSD
YLTLARCIGNGPLYCWRHHYLLALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADALRFISHGNWWLVL
FPGLMLLLLVLLFDQFARALQRLWLRSESC

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=229, Percent_Identity=31.0043668122271, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787054, Length=251, Percent_Identity=29.4820717131474, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1789889, Length=234, Percent_Identity=29.0598290598291, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1789964, Length=220, Percent_Identity=34.0909090909091, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788505, Length=187, Percent_Identity=30.4812834224599, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787498, Length=214, Percent_Identity=27.5700934579439, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787549, Length=214, Percent_Identity=27.1028037383178, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29825; Mature: 29825

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYNPAPTLARLFIASFLLLLIAGYASTSLDQALTIDLLARHQPPSALHWFGTDNMGRDL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHH
WLRSFQGALTSLQIGTGAALCSGIIALLMAALSQLHPRLDTLMRLLTDTMLALPHLLLLI
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LICFTLGGGKSGVIMAVALTHWPRLALILRAEAQRIAHSDYLTLARCIGNGPLYCWRHHY
HHHHHCCCCCCCCEEHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHH
LLALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADALRFISHGNWWLVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEHH
FPGLMLLLLVLLFDQFARALQRLWLRSESC
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLYNPAPTLARLFIASFLLLLIAGYASTSLDQALTIDLLARHQPPSALHWFGTDNMGRDL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHH
WLRSFQGALTSLQIGTGAALCSGIIALLMAALSQLHPRLDTLMRLLTDTMLALPHLLLLI
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LICFTLGGGKSGVIMAVALTHWPRLALILRAEAQRIAHSDYLTLARCIGNGPLYCWRHHY
HHHHHCCCCCCCCEEHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHH
LLALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADALRFISHGNWWLVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEHH
FPGLMLLLLVLLFDQFARALQRLWLRSESC
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA