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The map label for this gene is ompW [H]

Identifier: 238919586

GI number: 238919586

Start: 1646115

End: 1646756

Strand: Direct

Name: ompW [H]

Synonym: NT01EI_1685

Alternate gene names: 238919586

Gene position: 1646115-1646756 (Clockwise)

Preceding gene: 238919583

Following gene: 238919594

Centisome position: 43.18

GC content: 58.88

Gene sequence:

>642_bases
ATGATGAAAAAGTGTAGCGTTGCGCTGTGTCTGGCCGCCGTATTGGCGCCTGCGGCGGCATCGGCTCATCAGGCCGGTGA
TGTGATTGTCCGCGCCGGCGCGGCCACCGTGCGTCCGACCACCAGCTCTGATAATGTGCTGGGGCTGGGCGGGTTTAACG
TGGACAACAATACCCAGCTGGGGCTGACCTTCGGCTACATGGCAACGGATAACATCGGCATTGAGCTGCTGGCGGCAACG
CCGTTCCGCCACAAGGTCTCGCTGGGGGGGCTGGGAAATATTGCGACCGTGCATCAGCTGCCGCCCACCCTGATGGCCCA
GTGGTACTTTGGCCGTGCGGAAGACAAGCTGCGCCCCTATCTGGGGGTCGGGGTGAATTACACCACCTTCTTCAACAACA
GCTTCGATCAGAATGCGACGTCGCTGGGGCTGCACGATCTGAAGGCGACAGACTCCTGGGGCGTTGCCGGGCAGGCCGGG
CTCGACTATATGGTCAGCGAAAACTGGATGATCAACGCCTCGGTGTGGTACATCAGCATTGATACCAAGGTGAAGTTCCG
CGATAGCTCGGATAGCCAGCACAGCATAAATACCAACATTAATCCGTGGGTATTTATGTTCGGCGCCGGCTATCGTTTCT
GA

Upstream 100 bases:

>100_bases
AGTTTTGTTTGTATGTAAAAGATGTGATCTCGAATGAATCAATAATCATCCAACATGGTTATATTGCAAGTGAACGATAA
CCATATAAAGGAAAGGGATG

Downstream 100 bases:

>100_bases
TCGGCAACAGCGGTAGAGAGGCTGCCCCGGGCGGGCAGCCTGAACGTGTTATTTAATACGCATATCGTTTTCGACCGAGC
GGACGCCCTTAATGCCCCGG

Product: outer membrane protein W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MMKKCSVALCLAAVLAPAAASAHQAGDVIVRAGAATVRPTTSSDNVLGLGGFNVDNNTQLGLTFGYMATDNIGIELLAAT
PFRHKVSLGGLGNIATVHQLPPTLMAQWYFGRAEDKLRPYLGVGVNYTTFFNNSFDQNATSLGLHDLKATDSWGVAGQAG
LDYMVSENWMINASVWYISIDTKVKFRDSSDSQHSINTNINPWVFMFGAGYRF

Sequences:

>Translated_213_residues
MMKKCSVALCLAAVLAPAAASAHQAGDVIVRAGAATVRPTTSSDNVLGLGGFNVDNNTQLGLTFGYMATDNIGIELLAAT
PFRHKVSLGGLGNIATVHQLPPTLMAQWYFGRAEDKLRPYLGVGVNYTTFFNNSFDQNATSLGLHDLKATDSWGVAGQAG
LDYMVSENWMINASVWYISIDTKVKFRDSSDSQHSINTNINPWVFMFGAGYRF
>Mature_213_residues
MMKKCSVALCLAAVLAPAAASAHQAGDVIVRAGAATVRPTTSSDNVLGLGGFNVDNNTQLGLTFGYMATDNIGIELLAAT
PFRHKVSLGGLGNIATVHQLPPTLMAQWYFGRAEDKLRPYLGVGVNYTTFFNNSFDQNATSLGLHDLKATDSWGVAGQAG
LDYMVSENWMINASVWYISIDTKVKFRDSSDSQHSINTNINPWVFMFGAGYRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=213, Percent_Identity=58.2159624413146, Blast_Score=265, Evalue=2e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 22992; Mature: 22992

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKCSVALCLAAVLAPAAASAHQAGDVIVRAGAATVRPTTSSDNVLGLGGFNVDNNTQL
CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEECCCCCCCCEEEECCCCCCCCCEE
GLTFGYMATDNIGIELLAATPFRHKVSLGGLGNIATVHQLPPTLMAQWYFGRAEDKLRPY
EEEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEHHHCCHHHHHHECCCCCCCCCCCE
LGVGVNYTTFFNNSFDQNATSLGLHDLKATDSWGVAGQAGLDYMVSENWMINASVWYISI
EECCCEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEECCCEEEEEEEEEEEE
DTKVKFRDSSDSQHSINTNINPWVFMFGAGYRF
CCEEEEECCCCCCCEECCCCCCEEEEECCCCCC
>Mature Secondary Structure
MMKKCSVALCLAAVLAPAAASAHQAGDVIVRAGAATVRPTTSSDNVLGLGGFNVDNNTQL
CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEECCCCCCCCEEEECCCCCCCCCEE
GLTFGYMATDNIGIELLAATPFRHKVSLGGLGNIATVHQLPPTLMAQWYFGRAEDKLRPY
EEEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEHHHCCHHHHHHECCCCCCCCCCCE
LGVGVNYTTFFNNSFDQNATSLGLHDLKATDSWGVAGQAGLDYMVSENWMINASVWYISI
EECCCEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEECCCEEEEEEEEEEEE
DTKVKFRDSSDSQHSINTNINPWVFMFGAGYRF
CCEEEEECCCCCCCEECCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]