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The map label for this gene is ychE [H]

Identifier: 238919568

GI number: 238919568

Start: 1626683

End: 1627327

Strand: Direct

Name: ychE [H]

Synonym: NT01EI_1667

Alternate gene names: 238919568

Gene position: 1626683-1627327 (Clockwise)

Preceding gene: 238919565

Following gene: 238919569

Centisome position: 42.67

GC content: 53.95

Gene sequence:

>645_bases
GTGACTCAGCCTCTGCTGGATCTGTCCGGGTATATCAAATACTTTATTGGCCTGTTCGCCCTGGTAAACCCCGTCGGGAT
CTTGCCCGTATTTATCAGCATGACCAGCTATCAGGCCGCCGCGGCGCGCAACCGAACTAACCTTACGGCGAATCTTTCAG
TGGCCATTATTCTGATTACGGCGCTGCTGCTGGGGGATTCGATACTGAATGTCTTTGGTATCTCCATCGACTCTTTCCGT
ATTGCCGGCGGTATCTTGGTGATGACTATCGCCATGTCGATGATCAGCGGTAAGCTGGGTGAGGATAAGCAGAATAAGCA
GGAGAAGTCGGAAACGGCTATCCGCGAAAATGTTGGCGTGGTGCCGTTGGCGCTACCGCTAATGGCCGGTCCCGGTGCCA
TCAGCTCGACAATCGTCTGGAGCTCCCGCTATCACGGTTGGCAAAATCTATTGGGTTTTTCGCTGGCGATCATTCTGTTC
GCCTTCTGCTGTTGGCTGTTGTTCCGTGCTGCGCCACTGCTGATGCGATTGTTAGGGCAGTCGGGGATCAACGTCGTGAC
GCGTATCATGGGGCTGCTGCTGATGGCGTTGGGTATTGAATTCATCGTCACCGGGGTGAAAGCTATTTTTCCCGGCCTGC
TGTAA

Upstream 100 bases:

>100_bases
CGGCAAATAGTAAAAATTCTATGGTGGAATGATAGATCGGCGCAGTCATTTCAATTACATTACGCGCGATGACCATCATC
TTTATATTGTGGAGCATATA

Downstream 100 bases:

>100_bases
TCGACAGAGGGCGGCGGTGACGCCGCCCCTGTAATAGATATATCTACACAATATATTTAATCATCTTATCTTTATTTTGC
GAGCGTATTTGGTGGTGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MTQPLLDLSGYIKYFIGLFALVNPVGILPVFISMTSYQAAAARNRTNLTANLSVAIILITALLLGDSILNVFGISIDSFR
IAGGILVMTIAMSMISGKLGEDKQNKQEKSETAIRENVGVVPLALPLMAGPGAISSTIVWSSRYHGWQNLLGFSLAIILF
AFCCWLLFRAAPLLMRLLGQSGINVVTRIMGLLLMALGIEFIVTGVKAIFPGLL

Sequences:

>Translated_214_residues
MTQPLLDLSGYIKYFIGLFALVNPVGILPVFISMTSYQAAAARNRTNLTANLSVAIILITALLLGDSILNVFGISIDSFR
IAGGILVMTIAMSMISGKLGEDKQNKQEKSETAIRENVGVVPLALPLMAGPGAISSTIVWSSRYHGWQNLLGFSLAIILF
AFCCWLLFRAAPLLMRLLGQSGINVVTRIMGLLLMALGIEFIVTGVKAIFPGLL
>Mature_213_residues
TQPLLDLSGYIKYFIGLFALVNPVGILPVFISMTSYQAAAARNRTNLTANLSVAIILITALLLGDSILNVFGISIDSFRI
AGGILVMTIAMSMISGKLGEDKQNKQEKSETAIRENVGVVPLALPLMAGPGAISSTIVWSSRYHGWQNLLGFSLAIILFA
FCCWLLFRAAPLLMRLLGQSGINVVTRIMGLLLMALGIEFIVTGVKAIFPGLL

Specific function: Unknown

COG id: COG2095

COG function: function code U; Multiple antibiotic transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0056 (marC) family [H]

Homologues:

Organism=Escherichia coli, GI1787494, Length=214, Percent_Identity=79.4392523364486, Blast_Score=340, Evalue=4e-95,
Organism=Escherichia coli, GI1787809, Length=197, Percent_Identity=33.502538071066, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789842, Length=191, Percent_Identity=26.7015706806283, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002771 [H]

Pfam domain/function: PF01914 MarC [H]

EC number: NA

Molecular weight: Translated: 22988; Mature: 22857

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPLLDLSGYIKYFIGLFALVNPVGILPVFISMTSYQAAAARNRTNLTANLSVAIILIT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ALLLGDSILNVFGISIDSFRIAGGILVMTIAMSMISGKLGEDKQNKQEKSETAIRENVGV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
VPLALPLMAGPGAISSTIVWSSRYHGWQNLLGFSLAIILFAFCCWLLFRAAPLLMRLLGQ
HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SGINVVTRIMGLLLMALGIEFIVTGVKAIFPGLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TQPLLDLSGYIKYFIGLFALVNPVGILPVFISMTSYQAAAARNRTNLTANLSVAIILIT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ALLLGDSILNVFGISIDSFRIAGGILVMTIAMSMISGKLGEDKQNKQEKSETAIRENVGV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
VPLALPLMAGPGAISSTIVWSSRYHGWQNLLGFSLAIILFAFCCWLLFRAAPLLMRLLGQ
HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SGINVVTRIMGLLLMALGIEFIVTGVKAIFPGLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2015910; 9097039; 9278503 [H]