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The map label for this gene is yoaA [H]

Identifier: 238919519

GI number: 238919519

Start: 1576159

End: 1578093

Strand: Direct

Name: yoaA [H]

Synonym: NT01EI_1615

Alternate gene names: 238919519

Gene position: 1576159-1578093 (Clockwise)

Preceding gene: 238919517

Following gene: 238919520

Centisome position: 41.34

GC content: 63.51

Gene sequence:

>1935_bases
GTGGCCGATGATTTTGCCCCCGACGGGCTATTAACCCAGAGTATTCCCGGCTTCACCCCCCGGGAGGCCCAGCGTCAGAT
GGCGCAGGCGATCAGCGCGGTGATTGCGGCGCGGGGATCGCTGGTGGTGGAGGCCGGTACCGGCACCGGTAAGACCTTTG
CCTATCTGGTTCCGGCGCTGCGCTGCGGCCATAAGGTGATCATTTCGACCGGTTCCAAGGCGCTGCAGGATCAGCTGTAT
AACCGCGATCTGCCGCTGATGAAGCGGGTGCTGAACTTTCAGGGGGCGACCGCGCTGCTGAAAGGGCGGGCCAACTACCT
GTGCCCGGAGCGCCTGGAGCAGCAGTCGTTGGCAGGTGGCGATATCGCCCCGGCGCTGCTGGCGGAGCTGATGCGGGTGC
GCAGCTGGTCATCGCAGACCGGGGATGGCGATATCAGCCACTGCCATGGGGTGGCGGAAGATAGCGCCGTCTGGCCGCTG
GTGACCAGTAATAACGATAACTGTCTGGGCGGGGACTGTCCCCACTATAAAGCGTGCTATGTGGTCAAGGCGCGCCGCCG
TGCCATGGATGCTCAGGTCGTGGTGGTGAACCACCATCTGTTTTTAGCCGACCTGGTAGTCAAAGAGGGGGGCTTTGGCG
AGCTGATCCCGGAGGCTGAAGTGACCATTTTTGATGAGGCGCATCAGGTGCCGGACATCGCCAGTCAATATTTTGGCCAG
CAGCTCTCCAGCCGCCAGCTGTTGGATCTGGCGCGCGACATGATCATGGCGTACCGTACCGAGCTGCGGGACGTCGCCCA
GCTGCAGAAAAGCGCCGATCTGCTGACCCAGCGCAGCCTCGATCTGCGCATCGTTCTGGGCGATCCGGGCTTTCGCGGTA
ACCTGCGCGATATCCTCGCGCAGGCCGAGGTGCGCCGCTCTCTGGTGCTGGTGGATGATGCACTGGAGCTGTGCTACGAC
GTGATGAAAATGTCGCTGGGCCGCTCGGCGCTGCTCGATGCCGCCTTTGAGCGCGCCACACTGTACCGCAACCGTCTGAA
GCGCCTTTCTGACGTTATGCAGCCCGGCTACTCATACTGGTATGAGTGTACGCCGCGTCATTTCGTGCTGGCGCTGACGC
CGCTGACGGTGGCGGAGAAATTCAGTGAGCTGATGCGCAGTAAGCCCGGAGCCTGGATTTTTACCTCGGCAACGCTGGCG
GTGGAGGATGACGTCTCGCACTTCAGTGCGCGTTTGGGGCTGACGGCGGCGCAGAGCCTGCTGCTGCCCAGTCCCTTCGA
CTATGCTCATCAGGCGCTGCTGTGCGTGCCACGCTTCCTGCCACCGTCCAACCAGCGCGGTGCCGCCGCACAGCTGGCGC
AGATGCTGACGCCGCTGATTGAGGCCAACAATGGCCGCTGTTTCTTTCTGTGTACCTCACACGCCATGATGCGCGAGCTG
GCGCAGGCCTTTCGCGCCAGCCTCACGCTGCCGGTGCTGGTGCAGGGGGAGAGCGGAAAGTCCCGGCTGCTGGCTGACTT
CATTGCCGCCGGTAACGCGCTGCTGGTGGCGACGGGTAGCTTCTGGGAAGGCGTGGACGTGCGCGGCGATACCCTGAGCT
GTGTGATAATCGACAAGCTGCCCTTTACCGCGCCGGACGATCCGCTGCTCAAGGCACGCATGGAGGATTGTCGTCTGCGT
GGGGGCGATCCCTTTACCCAGGTACAGCTGCCCGATGCGGTGATCACCCTGAAGCAGGGGGTGGGGCGTCTGATCCGCGA
CAGCCGCGATCGCGGGGCCATCATTATCTGCGACAGCCGCCTGGTGATGCGCCCCTATGGCGAGGTGTTTTTGCGCAGCC
TGCCGCCTGCGCCGCGCACCCGCGATCTGGCGCGGGTTATCGACTTTTTGCGCGCCGTGCCAAGCATGGCGCCGGAGGAG
GGAAAGGTGAATTGA

Upstream 100 bases:

>100_bases
CCTCCGCGCCCCCACGTCGCGCGCTATCTGCGCGGGAAGATGGAGCTTGCGCCGCGGAGTTGGCATAATCCCCTTTTTAC
TCCTCCTGATGAGAGATGCC

Downstream 100 bases:

>100_bases
GAAACACAGGGTTAAGGGGCTGTGTTATTATTCTGCCCATTGATAATTCATTTCTTTTCTTGCCGAGGTTGGCATGTCCA
CGCGAATTTTAGCGATTGAT

Product: helicase c2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 644; Mature: 643

Protein sequence:

>644_residues
MADDFAPDGLLTQSIPGFTPREAQRQMAQAISAVIAARGSLVVEAGTGTGKTFAYLVPALRCGHKVIISTGSKALQDQLY
NRDLPLMKRVLNFQGATALLKGRANYLCPERLEQQSLAGGDIAPALLAELMRVRSWSSQTGDGDISHCHGVAEDSAVWPL
VTSNNDNCLGGDCPHYKACYVVKARRRAMDAQVVVVNHHLFLADLVVKEGGFGELIPEAEVTIFDEAHQVPDIASQYFGQ
QLSSRQLLDLARDMIMAYRTELRDVAQLQKSADLLTQRSLDLRIVLGDPGFRGNLRDILAQAEVRRSLVLVDDALELCYD
VMKMSLGRSALLDAAFERATLYRNRLKRLSDVMQPGYSYWYECTPRHFVLALTPLTVAEKFSELMRSKPGAWIFTSATLA
VEDDVSHFSARLGLTAAQSLLLPSPFDYAHQALLCVPRFLPPSNQRGAAAQLAQMLTPLIEANNGRCFFLCTSHAMMREL
AQAFRASLTLPVLVQGESGKSRLLADFIAAGNALLVATGSFWEGVDVRGDTLSCVIIDKLPFTAPDDPLLKARMEDCRLR
GGDPFTQVQLPDAVITLKQGVGRLIRDSRDRGAIIICDSRLVMRPYGEVFLRSLPPAPRTRDLARVIDFLRAVPSMAPEE
GKVN

Sequences:

>Translated_644_residues
MADDFAPDGLLTQSIPGFTPREAQRQMAQAISAVIAARGSLVVEAGTGTGKTFAYLVPALRCGHKVIISTGSKALQDQLY
NRDLPLMKRVLNFQGATALLKGRANYLCPERLEQQSLAGGDIAPALLAELMRVRSWSSQTGDGDISHCHGVAEDSAVWPL
VTSNNDNCLGGDCPHYKACYVVKARRRAMDAQVVVVNHHLFLADLVVKEGGFGELIPEAEVTIFDEAHQVPDIASQYFGQ
QLSSRQLLDLARDMIMAYRTELRDVAQLQKSADLLTQRSLDLRIVLGDPGFRGNLRDILAQAEVRRSLVLVDDALELCYD
VMKMSLGRSALLDAAFERATLYRNRLKRLSDVMQPGYSYWYECTPRHFVLALTPLTVAEKFSELMRSKPGAWIFTSATLA
VEDDVSHFSARLGLTAAQSLLLPSPFDYAHQALLCVPRFLPPSNQRGAAAQLAQMLTPLIEANNGRCFFLCTSHAMMREL
AQAFRASLTLPVLVQGESGKSRLLADFIAAGNALLVATGSFWEGVDVRGDTLSCVIIDKLPFTAPDDPLLKARMEDCRLR
GGDPFTQVQLPDAVITLKQGVGRLIRDSRDRGAIIICDSRLVMRPYGEVFLRSLPPAPRTRDLARVIDFLRAVPSMAPEE
GKVN
>Mature_643_residues
ADDFAPDGLLTQSIPGFTPREAQRQMAQAISAVIAARGSLVVEAGTGTGKTFAYLVPALRCGHKVIISTGSKALQDQLYN
RDLPLMKRVLNFQGATALLKGRANYLCPERLEQQSLAGGDIAPALLAELMRVRSWSSQTGDGDISHCHGVAEDSAVWPLV
TSNNDNCLGGDCPHYKACYVVKARRRAMDAQVVVVNHHLFLADLVVKEGGFGELIPEAEVTIFDEAHQVPDIASQYFGQQ
LSSRQLLDLARDMIMAYRTELRDVAQLQKSADLLTQRSLDLRIVLGDPGFRGNLRDILAQAEVRRSLVLVDDALELCYDV
MKMSLGRSALLDAAFERATLYRNRLKRLSDVMQPGYSYWYECTPRHFVLALTPLTVAEKFSELMRSKPGAWIFTSATLAV
EDDVSHFSARLGLTAAQSLLLPSPFDYAHQALLCVPRFLPPSNQRGAAAQLAQMLTPLIEANNGRCFFLCTSHAMMRELA
QAFRASLTLPVLVQGESGKSRLLADFIAAGNALLVATGSFWEGVDVRGDTLSCVIIDKLPFTAPDDPLLKARMEDCRLRG
GDPFTQVQLPDAVITLKQGVGRLIRDSRDRGAIIICDSRLVMRPYGEVFLRSLPPAPRTRDLARVIDFLRAVPSMAPEEG
KVN

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=635, Percent_Identity=73.2283464566929, Blast_Score=981, Evalue=0.0,
Organism=Escherichia coli, GI1787018, Length=690, Percent_Identity=28.5507246376812, Blast_Score=191, Evalue=8e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 70726; Mature: 70595

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADDFAPDGLLTQSIPGFTPREAQRQMAQAISAVIAARGSLVVEAGTGTGKTFAYLVPAL
CCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
RCGHKVIISTGSKALQDQLYNRDLPLMKRVLNFQGATALLKGRANYLCPERLEQQSLAGG
HCCCEEEEECCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHCCCC
DIAPALLAELMRVRSWSSQTGDGDISHCHGVAEDSAVWPLVTSNNDNCLGGDCPHYKACY
CCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHH
VVKARRRAMDAQVVVVNHHLFLADLVVKEGGFGELIPEAEVTIFDEAHQVPDIASQYFGQ
EEHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEECCHHCCHHHHHHHHHH
QLSSRQLLDLARDMIMAYRTELRDVAQLQKSADLLTQRSLDLRIVLGDPGFRGNLRDILA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
QAEVRRSLVLVDDALELCYDVMKMSLGRSALLDAAFERATLYRNRLKRLSDVMQPGYSYW
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHE
YECTPRHFVLALTPLTVAEKFSELMRSKPGAWIFTSATLAVEDDVSHFSARLGLTAAQSL
EECCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHH
LLPSPFDYAHQALLCVPRFLPPSNQRGAAAQLAQMLTPLIEANNGRCFFLCTSHAMMREL
CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH
AQAFRASLTLPVLVQGESGKSRLLADFIAAGNALLVATGSFWEGVDVRGDTLSCVIIDKL
HHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEECC
PFTAPDDPLLKARMEDCRLRGGDPFTQVQLPDAVITLKQGVGRLIRDSRDRGAIIICDSR
CCCCCCCHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCC
LVMRPYGEVFLRSLPPAPRTRDLARVIDFLRAVPSMAPEEGKVN
EEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ADDFAPDGLLTQSIPGFTPREAQRQMAQAISAVIAARGSLVVEAGTGTGKTFAYLVPAL
CCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
RCGHKVIISTGSKALQDQLYNRDLPLMKRVLNFQGATALLKGRANYLCPERLEQQSLAGG
HCCCEEEEECCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHCCCC
DIAPALLAELMRVRSWSSQTGDGDISHCHGVAEDSAVWPLVTSNNDNCLGGDCPHYKACY
CCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHH
VVKARRRAMDAQVVVVNHHLFLADLVVKEGGFGELIPEAEVTIFDEAHQVPDIASQYFGQ
EEHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEECCHHCCHHHHHHHHHH
QLSSRQLLDLARDMIMAYRTELRDVAQLQKSADLLTQRSLDLRIVLGDPGFRGNLRDILA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
QAEVRRSLVLVDDALELCYDVMKMSLGRSALLDAAFERATLYRNRLKRLSDVMQPGYSYW
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHE
YECTPRHFVLALTPLTVAEKFSELMRSKPGAWIFTSATLAVEDDVSHFSARLGLTAAQSL
EECCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHH
LLPSPFDYAHQALLCVPRFLPPSNQRGAAAQLAQMLTPLIEANNGRCFFLCTSHAMMREL
CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH
AQAFRASLTLPVLVQGESGKSRLLADFIAAGNALLVATGSFWEGVDVRGDTLSCVIIDKL
HHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEECC
PFTAPDDPLLKARMEDCRLRGGDPFTQVQLPDAVITLKQGVGRLIRDSRDRGAIIICDSR
CCCCCCCHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCC
LVMRPYGEVFLRSLPPAPRTRDLARVIDFLRAVPSMAPEEGKVN
EEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]