| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
Click here to switch to the map view.
The map label for this gene is 238919416
Identifier: 238919416
GI number: 238919416
Start: 1478437
End: 1479285
Strand: Direct
Name: 238919416
Synonym: NT01EI_1510
Alternate gene names: NA
Gene position: 1478437-1479285 (Clockwise)
Preceding gene: 238919414
Following gene: 238919417
Centisome position: 38.78
GC content: 52.77
Gene sequence:
>849_bases TTGCCTGATTTTGATATGTTCAATCCAACATCAAAAGCAGGTTACTTTATGAACGAAAAACAGTTGCAGGCTCTGGCTAA CGAACTGGCCAAAAATCTCAAAACCCCTGACGATCTCAGCCAGTTCGATCGCCTGCTGAAGAAAATCAGCGTTGAGGCGG CTCTCAACGCCGAAATGTCCCACCATCTGGGCTACGATAAAAATCAGCCTAAACCGGGTGCCAACTCCCGCAATGGCTAT TCCACAAAGACCGTTACCACCGGTGATGGCCCTCTGGAACTACGCACGCCGCGTGATCGTGATGGCTCTTTCGAACCGCA ACTGGTGAAGAAAAACCAGACCCGGATCACCGGTATGGATAACCAGATTTTATCGTTGTACGCCAAAGGGATGACCACCC GCGAGATAGCGGCCGCGTTCAAAGAGCTGTATGACGCTGATGTCTCACCGGCGCTGGTCTCGAAGGTCACCGACGCCGTA ATGGAGCAGGTTACCGAATGGCAGAATCGTCCACTGGATGCAGTCTATCCCATTGTTTACCTTGACTGTATCGTCCTGAA GGTCCGGCAGGACAGTCGCGTCATTAATAAATCCGTGTTCCTTGCCCTGGGTATCAACCTCGAAGGCCAGAAAGAACTGC TGGGTATGTGGCTGGCCGAAAACGAAGGCGCGAAGTTCTGGCTCAATGTGCTGACAGAGCTGAAGAATCGCGGCCTGAAC GATATCCTCATCGCCTGTGTCGATGGTCTGAAAGGCTTCCCGGACGCGATCAATACGGTGTATCCGGAAGCCCGCATCCA GCTGTGCATCGTGCATATGGTGCGTAACAGCCTGCGGTTCGTCTCCTGA
Upstream 100 bases:
>100_bases CCTGGGCGGCCACCCCGTGACGAAGGCAGTTGGGGCGGCAGAAGTGGCTGTCAGGATTTCCAGAGCTGCTTACTGAGAGC CTGTACATAAATTTGTGTAA
Downstream 100 bases:
>100_bases GGACTACAAAGCCGTCACCCGCGACCTGAAAGCCATTTATCAGGCCCCCACGGAAGACGCAGGGCAGCAGGCGCTGGAAG CGTTCGCCAGCGCATGGGAC
Product: transposase, Mutator family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 282; Mature: 281
Protein sequence:
>282_residues MPDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMSHHLGYDKNQPKPGANSRNGY STKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAV MEQVTEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN DILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVS
Sequences:
>Translated_282_residues MPDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMSHHLGYDKNQPKPGANSRNGY STKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAV MEQVTEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN DILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVS >Mature_281_residues PDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMSHHLGYDKNQPKPGANSRNGYS TKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVM EQVTEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLND ILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVS
Specific function: Required for the transposition of the insertion element [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 31627; Mature: 31496
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: PS01007 TRANSPOSASE_MUTATOR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH HHLGYDKNQPKPGANSRNGYSTKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMD HHCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCHHHCCCCCEECCCC NQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVMEQVTEWQNRPLDAVYPIVY HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN HHHHHHHHCCCHHHHHHHEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH DILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVS HHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMS CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH HHLGYDKNQPKPGANSRNGYSTKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMD HHCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCHHHCCCCCEECCCC NQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVMEQVTEWQNRPLDAVYPIVY HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN HHHHHHHHCCCHHHHHHHEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH DILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVS HHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1849509; 1327271; 11481430; 11481432 [H]