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The map label for this gene is dcuD [C]

Identifier: 238919380

GI number: 238919380

Start: 1446681

End: 1447958

Strand: Reverse

Name: dcuD [C]

Synonym: NT01EI_1474

Alternate gene names: 238919380

Gene position: 1447958-1446681 (Counterclockwise)

Preceding gene: 238919382

Following gene: 238919379

Centisome position: 37.98

GC content: 60.49

Gene sequence:

>1278_bases
ATGCTGACGGTAATATTAGGCGTCGTAGTTTTAATTGCCACGATCGTTTTATTGATTAAACGATACGATACCCGTACCAC
GCTTATCGGCGCTGGCATTCTATTATGTATTATCTCACTGGCACCGATGAATGCCTTTAGCGCGTTTACTGCCCGTATGA
CCACCTCCGGGCTGATCGAATCGATCTGCAGCAGCATGGGCTTTGCCTATGTGATGAAATTTACCGGCTGCGATAGGTGT
CTGGTGCGGCTGCTGACCCGCGGATTGAGCAAACTCGGCTTTCTGCTGGTACCGACGGCCGTGGCCGTCACCTTTGTCAT
CTGTATCGCCATCCCCTCTGCCGCCGGGGTCTCCGCCGCGGTGGGCGCCACGCTGATCCCGCTGTTGATCGCCGCGCGGG
TGCATCCGGCCATCGCCGGCGGCGCCGTGCTCTCCGGCACGCTGGGAGCCTACCTGAATCCCGGCGTGGCCCACAATGCC
TTTATCTCCCATATCTCTAAAACGCCGCTGATGGACTTTGTCTTCTACCATGCGCCGACCACCGTCATCTGTGCCATTAT
CTGCGCCGTCTGCCTGACGCTGGTAGCCTTTGCCAGCAACGGCCTTAACTACCGCCCTGAAGGCCCTGCGACGCAGGAGG
CCGGGTCGGCACAGGCGGATCCGGTACGCAATCTGCGCTTCTATCTGCAGACCCTGGCCCCATTTCTGCCGGTGCTGCTG
CTGGTCTGCGCCAGCCTGGGCTGGCCCGGCAGCAGCAAGATGAACGTCCCGGCGGCGATGATCATCGGCTCCCTGTACGC
GCTGCTGATCACCCGGGTCAGCCCCAGCGCCCTGACCAAAAGCTTTTTTGACGGCATGGGCTCCTCTTACGCCAACATCC
TTGGCATCATCATCGCCGCCGCCGTCTTCATCGAAGGGTTAAACGCCGTCGGCCTGATCAGGGCCTTTATCCAGCTGCTG
ACCGACTCGCCGGAGTTCGCCCGCTGGGGCGGCACCTTAGGGCCATTTCTGATGGGGCTGATCACCGGCACCGGTGACGC
CACCGCCTTTGCCTTTAATGAGGCTGTCACCCCACACGCAGGTGACTTTGGATATGAAATCAATAATCTGGGTGCCGGTG
TCATGCTCGCGTCGGCCCTGGGTCGCAATATGTCACCGCTCGCCGGTGCCGCCATCGTCTGCGCCGGCCTGGCCGGTGTC
AGCCCGGTTGAAATCGCCAAGCGCACCGCGCCGGGTGCTATCGTTGCCGTGCTGTACGTGGCGCTGTTTTTCCTTTAA

Upstream 100 bases:

>100_bases
ATAGCATATTACCCTGCCATCAATTTTTGCGTTAAATCAATAGTCATGACACTGGCTTTATTCACTATAAAACAAACCAT
AAATCTGGGGAGAGTCATTT

Downstream 100 bases:

>100_bases
TCACACAGGGAGATCATGATGACCATTTCCGATCCGGAACAGCTGCGCCGCTGGCGCCGTATGTTCCACCAAATTCCTGA
AACCGGCTGGAGTGAATTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MLTVILGVVVLIATIVLLIKRYDTRTTLIGAGILLCIISLAPMNAFSAFTARMTTSGLIESICSSMGFAYVMKFTGCDRC
LVRLLTRGLSKLGFLLVPTAVAVTFVICIAIPSAAGVSAAVGATLIPLLIAARVHPAIAGGAVLSGTLGAYLNPGVAHNA
FISHISKTPLMDFVFYHAPTTVICAIICAVCLTLVAFASNGLNYRPEGPATQEAGSAQADPVRNLRFYLQTLAPFLPVLL
LVCASLGWPGSSKMNVPAAMIIGSLYALLITRVSPSALTKSFFDGMGSSYANILGIIIAAAVFIEGLNAVGLIRAFIQLL
TDSPEFARWGGTLGPFLMGLITGTGDATAFAFNEAVTPHAGDFGYEINNLGAGVMLASALGRNMSPLAGAAIVCAGLAGV
SPVEIAKRTAPGAIVAVLYVALFFL

Sequences:

>Translated_425_residues
MLTVILGVVVLIATIVLLIKRYDTRTTLIGAGILLCIISLAPMNAFSAFTARMTTSGLIESICSSMGFAYVMKFTGCDRC
LVRLLTRGLSKLGFLLVPTAVAVTFVICIAIPSAAGVSAAVGATLIPLLIAARVHPAIAGGAVLSGTLGAYLNPGVAHNA
FISHISKTPLMDFVFYHAPTTVICAIICAVCLTLVAFASNGLNYRPEGPATQEAGSAQADPVRNLRFYLQTLAPFLPVLL
LVCASLGWPGSSKMNVPAAMIIGSLYALLITRVSPSALTKSFFDGMGSSYANILGIIIAAAVFIEGLNAVGLIRAFIQLL
TDSPEFARWGGTLGPFLMGLITGTGDATAFAFNEAVTPHAGDFGYEINNLGAGVMLASALGRNMSPLAGAAIVCAGLAGV
SPVEIAKRTAPGAIVAVLYVALFFL
>Mature_425_residues
MLTVILGVVVLIATIVLLIKRYDTRTTLIGAGILLCIISLAPMNAFSAFTARMTTSGLIESICSSMGFAYVMKFTGCDRC
LVRLLTRGLSKLGFLLVPTAVAVTFVICIAIPSAAGVSAAVGATLIPLLIAARVHPAIAGGAVLSGTLGAYLNPGVAHNA
FISHISKTPLMDFVFYHAPTTVICAIICAVCLTLVAFASNGLNYRPEGPATQEAGSAQADPVRNLRFYLQTLAPFLPVLL
LVCASLGWPGSSKMNVPAAMIIGSLYALLITRVSPSALTKSFFDGMGSSYANILGIIIAAAVFIEGLNAVGLIRAFIQLL
TDSPEFARWGGTLGPFLMGLITGTGDATAFAFNEAVTPHAGDFGYEINNLGAGVMLASALGRNMSPLAGAAIVCAGLAGV
SPVEIAKRTAPGAIVAVLYVALFFL

Specific function: Cryptic C4-dicarboxylate carrier [C]

COG id: COG3069

COG function: function code C; C4-dicarboxylate transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dcuC/dcuD transporter (TC 2.A.61) family [H]

Homologues:

Organism=Escherichia coli, GI1789622, Length=447, Percent_Identity=23.489932885906, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786839, Length=365, Percent_Identity=25.2054794520548, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018385
- InterPro:   IPR004669 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 43893; Mature: 43893

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHC
>Mature Secondary Structure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HHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]