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The map label for this gene is flhC [H]

Identifier: 238919359

GI number: 238919359

Start: 1429866

End: 1430450

Strand: Direct

Name: flhC [H]

Synonym: NT01EI_1453

Alternate gene names: 238919359

Gene position: 1429866-1430450 (Clockwise)

Preceding gene: 238919358

Following gene: 238919360

Centisome position: 37.51

GC content: 55.9

Gene sequence:

>585_bases
ATGAGCGAAAAAAGCATCATTCAGGAAGCACGCGACATACAGCTGGCGATGGAACTTATCTCTCTGGGGGCGCGTCTGCA
GATGTTGGAGAGCGAAACCCAGCTGAGCCGGGGACGCCTGATCAAGCTGTACAAGGAGCTGCGCGGCAGTCCGCCGCCGA
AGGGGATGCTGCCATTCTCCACCGACTGGTTTATGACATGGGAGCAGAATATCCACTCTTCCATGTTCTATAATATTTAT
GCGTTTATGCTGACCAGCGGCGCCTGCCACGGGGTAGAGGCGGTGATCCGCGCCTACAAACTCTACCTGGAGCAGTGTCC
GCCGGCGGACGGCGAATTGCCGGTGTTGGCGCTGACACGTGCCTGGACGCTGGTGCGCTTCGTCGAGAGCGGCATGTTGG
AATCGGCCCACTGCAACAGCTGTGACGGTAGCTTTATTACCCATGCTCATCAGCCGCTGCACAGTTTTGTCTGTAGTTTG
TGCCAACCGCCGTCGCGGGCGATAAAAGACGTAAACTTTCTGAGAATCCTGCCGATATCTTTCCACACTTGCTCGGTGAG
CAAGAGAAACGTGTGGTGTAACTGA

Upstream 100 bases:

>100_bases
GTGGACGATCTGCAACAGATTCATACCGGAATTCTTTTGTCCAGCCACCTGCTTCAGCAGCTGTCGGCAGATGGAAATGA
TTCGGGGAAACGGGGCTGAA

Downstream 100 bases:

>100_bases
TTGAGGCAATCAGCCCAGTAGCGTGCGGTACAGCGTCAATGCTACCGTGCGCTGTCTTCGGGCACATTCTGTCATCGACC
TTCTTCTTTCCGGCCCTGGG

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSEKSIIQEARDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHSSMFYNIY
AFMLTSGACHGVEAVIRAYKLYLEQCPPADGELPVLALTRAWTLVRFVESGMLESAHCNSCDGSFITHAHQPLHSFVCSL
CQPPSRAIKDVNFLRILPISFHTCSVSKRNVWCN

Sequences:

>Translated_194_residues
MSEKSIIQEARDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHSSMFYNIY
AFMLTSGACHGVEAVIRAYKLYLEQCPPADGELPVLALTRAWTLVRFVESGMLESAHCNSCDGSFITHAHQPLHSFVCSL
CQPPSRAIKDVNFLRILPISFHTCSVSKRNVWCN
>Mature_193_residues
SEKSIIQEARDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHSSMFYNIYA
FMLTSGACHGVEAVIRAYKLYLEQCPPADGELPVLALTRAWTLVRFVESGMLESAHCNSCDGSFITHAHQPLHSFVCSLC
QPPSRAIKDVNFLRILPISFHTCSVSKRNVWCN

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=169, Percent_Identity=80.4733727810651, Blast_Score=290, Evalue=4e-80,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 21984; Mature: 21853

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKSIIQEARDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWEQNIHSSMFYNIYAFMLTSGACHGVEAVIRAYKLYLEQCPPADGELPVLALTR
CCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AWTLVRFVESGMLESAHCNSCDGSFITHAHQPLHSFVCSLCQPPSRAIKDVNFLRILPIS
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEEE
FHTCSVSKRNVWCN
EEEECCCCCCCCCC
>Mature Secondary Structure 
SEKSIIQEARDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWEQNIHSSMFYNIYAFMLTSGACHGVEAVIRAYKLYLEQCPPADGELPVLALTR
CCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AWTLVRFVESGMLESAHCNSCDGSFITHAHQPLHSFVCSLCQPPSRAIKDVNFLRILPIS
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEEE
FHTCSVSKRNVWCN
EEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11060496 [H]