| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919284
Identifier: 238919284
GI number: 238919284
Start: 1362693
End: 1363640
Strand: Direct
Name: 238919284
Synonym: NT01EI_1374
Alternate gene names: NA
Gene position: 1362693-1363640 (Clockwise)
Preceding gene: 238919283
Following gene: 238919286
Centisome position: 35.74
GC content: 53.16
Gene sequence:
>948_bases GTGTCTAGCGCCGATCTGAGGCAGATCAAGGCAGAAAGGATATCACTGGATGACGAGGCGGCCATTAAGGCCATCAAGTC CACCCTCATTGCCGATGTCACGCTGGCAAACTTCCCCTACTCCCAGAATCAGAACGAGCTTCGGGTGGCGACCACTAAGG GGTGGGAGATCGGTGCGGGGAAACTGTTGCAGGATCAGAGCGTCGGTCCGGGGCAGAAGAATCTCGGTGAAAATGGCATC CTCACCAAGAGTGGTTTAACGGCCTACCTCTTCATCAATGAGAGAACCAAGGAAGCACGCGTCGTCTTCGGTGGTACCAC CTCCGGTGAAAAAGCGGGGGACCTGACTGCCCGAACCTGGGGTAACTTTGCCTCGACGGTCAGACAATGGCTGGCAAATA TAAAGAATGTCTTCTCGGGTACACCGGACAGTTATCGAGAGGCAGCGCAACTGGTCAAAAACCTGAATCAGGAGTTGTCC GGTTATACCTTGAGCGTATCGGGTCACTCCAAGGGGGGGGGCGAGTCCGCCTACGCCGCCATGATGCTGGGAGCACAAAT TAAGAAGCCGGTAACATCGATAAACTTCTCCTCCGCCGAGCTTGGCCCGCAATTGAAGCGGGATATTGCCGATGAATTGG CAAAAAATGGAGTACCACCCGAGGATATTGTCCGTGAGTTTAACGCGCTGAGCAGGGATATATTGCATGTCAATATTAAG GGAGATCCTGTTCCGAGCATGCACAGGGTCTTTGGCAGCATTTCAAATATAGGAAAAACCCTGACCCTGCCCAATGATAA TCAATCGGGCCTGCATCTTAGCGAACATGTCGACTTCTGTAGCCGCGTCACCAACTGGGCCCATTCGGAAACGATGACGC ATCACCATCTGCTTGCCTACTTATTCCCTCCACCTGATCAGCTCGGTCAGGCGAATCGATACGGATAA
Upstream 100 bases:
>100_bases GGCAAGCGGAGAGAGACAAGCCAGTACCAGCGGCTTACAACAGACCCCCAATGTCGCGGCTCCGCTTGCCTCCTCCAGGA CTTCGCTCAATACGTCAGCA
Downstream 100 bases:
>100_bases CGGAGATACTTTCGCGCCGTTGCTTGGACTGCCCCGGAGTCGGCGGTAAATTCTGTCCCCACGACGAGGCCTGTTTACAG GCCTCGGTGCAGCCACAATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MSSADLRQIKAERISLDDEAAIKAIKSTLIADVTLANFPYSQNQNELRVATTKGWEIGAGKLLQDQSVGPGQKNLGENGI LTKSGLTAYLFINERTKEARVVFGGTTSGEKAGDLTARTWGNFASTVRQWLANIKNVFSGTPDSYREAAQLVKNLNQELS GYTLSVSGHSKGGGESAYAAMMLGAQIKKPVTSINFSSAELGPQLKRDIADELAKNGVPPEDIVREFNALSRDILHVNIK GDPVPSMHRVFGSISNIGKTLTLPNDNQSGLHLSEHVDFCSRVTNWAHSETMTHHHLLAYLFPPPDQLGQANRYG
Sequences:
>Translated_315_residues MSSADLRQIKAERISLDDEAAIKAIKSTLIADVTLANFPYSQNQNELRVATTKGWEIGAGKLLQDQSVGPGQKNLGENGI LTKSGLTAYLFINERTKEARVVFGGTTSGEKAGDLTARTWGNFASTVRQWLANIKNVFSGTPDSYREAAQLVKNLNQELS GYTLSVSGHSKGGGESAYAAMMLGAQIKKPVTSINFSSAELGPQLKRDIADELAKNGVPPEDIVREFNALSRDILHVNIK GDPVPSMHRVFGSISNIGKTLTLPNDNQSGLHLSEHVDFCSRVTNWAHSETMTHHHLLAYLFPPPDQLGQANRYG >Mature_314_residues SSADLRQIKAERISLDDEAAIKAIKSTLIADVTLANFPYSQNQNELRVATTKGWEIGAGKLLQDQSVGPGQKNLGENGIL TKSGLTAYLFINERTKEARVVFGGTTSGEKAGDLTARTWGNFASTVRQWLANIKNVFSGTPDSYREAAQLVKNLNQELSG YTLSVSGHSKGGGESAYAAMMLGAQIKKPVTSINFSSAELGPQLKRDIADELAKNGVPPEDIVREFNALSRDILHVNIKG DPVPSMHRVFGSISNIGKTLTLPNDNQSGLHLSEHVDFCSRVTNWAHSETMTHHHLLAYLFPPPDQLGQANRYG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34202; Mature: 34071
Theoretical pI: Translated: 7.84; Mature: 7.84
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSADLRQIKAERISLDDEAAIKAIKSTLIADVTLANFPYSQNQNELRVATTKGWEIGAG CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCC KLLQDQSVGPGQKNLGENGILTKSGLTAYLFINERTKEARVVFGGTTSGEKAGDLTARTW CEECCCCCCCCHHCCCCCCCEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHH GNFASTVRQWLANIKNVFSGTPDSYREAAQLVKNLNQELSGYTLSVSGHSKGGGESAYAA HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHH MMLGAQIKKPVTSINFSSAELGPQLKRDIADELAKNGVPPEDIVREFNALSRDILHVNIK HHHHHHHHCCHHHCCCCHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEEC GDPVPSMHRVFGSISNIGKTLTLPNDNQSGLHLSEHVDFCSRVTNWAHSETMTHHHLLAY CCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEE LFPPPDQLGQANRYG ECCCHHHHCCCCCCC >Mature Secondary Structure SSADLRQIKAERISLDDEAAIKAIKSTLIADVTLANFPYSQNQNELRVATTKGWEIGAG CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCC KLLQDQSVGPGQKNLGENGILTKSGLTAYLFINERTKEARVVFGGTTSGEKAGDLTARTW CEECCCCCCCCHHCCCCCCCEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHH GNFASTVRQWLANIKNVFSGTPDSYREAAQLVKNLNQELSGYTLSVSGHSKGGGESAYAA HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHH MMLGAQIKKPVTSINFSSAELGPQLKRDIADELAKNGVPPEDIVREFNALSRDILHVNIK HHHHHHHHCCHHHCCCCHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEEC GDPVPSMHRVFGSISNIGKTLTLPNDNQSGLHLSEHVDFCSRVTNWAHSETMTHHHLLAY CCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEE LFPPPDQLGQANRYG ECCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA