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The map label for this gene is yfdE [H]

Identifier: 238919279

GI number: 238919279

Start: 1358104

End: 1359294

Strand: Direct

Name: yfdE [H]

Synonym: NT01EI_1369

Alternate gene names: 238919279

Gene position: 1358104-1359294 (Clockwise)

Preceding gene: 238919278

Following gene: 238919280

Centisome position: 35.62

GC content: 60.87

Gene sequence:

>1191_bases
ATGGAACAAACGTTAGCGGGCATCGTGGTGCTGGATCTGACCCGCGTACTGGCCGGGCCGTTTTGCAGCATGCTGCTGGC
GGATATGGGCGCCGAAGTGATCAAGATAGAACTGCCCGGTAAAGGCGATGACAGCCGTTCGTTTGCCCCCTTTGTCAACG
GGGAGAGCGCCTACTACATGAACCTGAATCGTAACAAGCAGGGGATGACCCTCAACCTGAAGAGTGAGCAGGGGAGAGCG
CTGTTTTTACGCCTGGTGGCGCGGGCAGATATCGTGCTGGAGAACTTTCGTCCCGGTACCATGGAAAAGCTGGCGCTGGG
GTATGAGCAACTGCGCCAGGTCAATCCGCGCCTGGTGTACGGCTGTGTCTCTGGCTTTGGCCACTATGGCCCGTATGCGG
CGCGCGCCGGTTACGACATTATCGGCCAGGCGATGGGGGGGATGATGAGCACCACCGGCTGGCCGGATGGGGAGCCGACC
CGCTGCGGCACGGCCATTGCAGATGTGCTGGCCGGTCTGTTTATGTCCACCGGCGTGCTGGCGGCCTGCCACAGCGCACA
GCGCACCGGTGAGGGGCAAAAGGTGGACGTGGCGCTGGTGGACTCCGTGGTTGCCGGAATGGAGATCATCAATCAGATCT
ATCTGGTGGATGGCATCGTGCCAGGCCGCAACGGGAACCGCTACGAGTCTATTTACCCCTATGACTCTTTCCGCTGTCTG
GACGGTACTCTGGTGATCGGCGCCGGTAACGATAAGCTCTATCATGCGCTGTGTCATCTGATGGCGCAGCCGGAGCTAAT
TGACGATCCCCGCTTTGTCACCAATCCGCTGCGCATTCGCCACAGCGCTGCGCTGAAGGCGATCGTCGAAAGGTGGCTGG
CCGATCAGATGATGGATCGGGCGATTGAACGGCTGCTGGCGGTAGGGATCCCGGCGGGGCCCATCAACACGATCGATCGG
GTGGTGCAGGATCCCCACATCGCCGGGGCTCGGCAGATGTTCGTGGATATGCAGCATCCGCGTGCCGGTAAGGTGACCAT
CACCGGCAACCCGATCAAGCTAAGCGCAGATGAGTACCGCGCGCCGCAGGCGTCACCGGCGCTGGGCGAGCACAGCTTGG
CTATCCTGCAGAAACATCTCGGTATTGATGCCGAGATGTTTCAGGCATTACAGCGGGAGGGGGTGCTGTAG

Upstream 100 bases:

>100_bases
ACATCTGCATCAGCATGTCGGGGGCAGCTACAGCGGCCACCATTTACACATCAGCGCCCGCCAGAAAGATTTTAACCCTT
AGAGCCAAAGGAGTGACCAG

Downstream 100 bases:

>100_bases
CGGGGCGCGCAGGATCCCATGGCCGCGGGCGGTGAATCGCGCCTCGCGCCGTAGCGTGGATCGCCTCCCCGGCATTTCAT
CACGGCGCATCGTGCCGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MEQTLAGIVVLDLTRVLAGPFCSMLLADMGAEVIKIELPGKGDDSRSFAPFVNGESAYYMNLNRNKQGMTLNLKSEQGRA
LFLRLVARADIVLENFRPGTMEKLALGYEQLRQVNPRLVYGCVSGFGHYGPYAARAGYDIIGQAMGGMMSTTGWPDGEPT
RCGTAIADVLAGLFMSTGVLAACHSAQRTGEGQKVDVALVDSVVAGMEIINQIYLVDGIVPGRNGNRYESIYPYDSFRCL
DGTLVIGAGNDKLYHALCHLMAQPELIDDPRFVTNPLRIRHSAALKAIVERWLADQMMDRAIERLLAVGIPAGPINTIDR
VVQDPHIAGARQMFVDMQHPRAGKVTITGNPIKLSADEYRAPQASPALGEHSLAILQKHLGIDAEMFQALQREGVL

Sequences:

>Translated_396_residues
MEQTLAGIVVLDLTRVLAGPFCSMLLADMGAEVIKIELPGKGDDSRSFAPFVNGESAYYMNLNRNKQGMTLNLKSEQGRA
LFLRLVARADIVLENFRPGTMEKLALGYEQLRQVNPRLVYGCVSGFGHYGPYAARAGYDIIGQAMGGMMSTTGWPDGEPT
RCGTAIADVLAGLFMSTGVLAACHSAQRTGEGQKVDVALVDSVVAGMEIINQIYLVDGIVPGRNGNRYESIYPYDSFRCL
DGTLVIGAGNDKLYHALCHLMAQPELIDDPRFVTNPLRIRHSAALKAIVERWLADQMMDRAIERLLAVGIPAGPINTIDR
VVQDPHIAGARQMFVDMQHPRAGKVTITGNPIKLSADEYRAPQASPALGEHSLAILQKHLGIDAEMFQALQREGVL
>Mature_396_residues
MEQTLAGIVVLDLTRVLAGPFCSMLLADMGAEVIKIELPGKGDDSRSFAPFVNGESAYYMNLNRNKQGMTLNLKSEQGRA
LFLRLVARADIVLENFRPGTMEKLALGYEQLRQVNPRLVYGCVSGFGHYGPYAARAGYDIIGQAMGGMMSTTGWPDGEPT
RCGTAIADVLAGLFMSTGVLAACHSAQRTGEGQKVDVALVDSVVAGMEIINQIYLVDGIVPGRNGNRYESIYPYDSFRCL
DGTLVIGAGNDKLYHALCHLMAQPELIDDPRFVTNPLRIRHSAALKAIVERWLADQMMDRAIERLLAVGIPAGPINTIDR
VVQDPHIAGARQMFVDMQHPRAGKVTITGNPIKLSADEYRAPQASPALGEHSLAILQKHLGIDAEMFQALQREGVL

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=395, Percent_Identity=35.9493670886076, Blast_Score=289, Evalue=3e-78,
Organism=Homo sapiens, GI300863124, Length=420, Percent_Identity=34.2857142857143, Blast_Score=283, Evalue=3e-76,
Organism=Homo sapiens, GI300863126, Length=395, Percent_Identity=32.1518987341772, Blast_Score=240, Evalue=2e-63,
Organism=Homo sapiens, GI13376042, Length=420, Percent_Identity=31.4285714285714, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI266456254, Length=388, Percent_Identity=28.8659793814433, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI42794625, Length=388, Percent_Identity=28.8659793814433, Blast_Score=139, Evalue=7e-33,
Organism=Homo sapiens, GI266458393, Length=257, Percent_Identity=34.6303501945525, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI266458397, Length=266, Percent_Identity=34.5864661654135, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=41.958041958042, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=43.0555555555556, Blast_Score=109, Evalue=5e-24,
Organism=Escherichia coli, GI87082093, Length=376, Percent_Identity=40.4255319148936, Blast_Score=313, Evalue=1e-86,
Organism=Escherichia coli, GI1788717, Length=421, Percent_Identity=30.4038004750594, Blast_Score=188, Evalue=5e-49,
Organism=Escherichia coli, GI1786222, Length=405, Percent_Identity=26.1728395061728, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=299, Percent_Identity=25.752508361204, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=298, Percent_Identity=24.1610738255034, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=37.4683544303797, Blast_Score=290, Evalue=9e-79,
Organism=Drosophila melanogaster, GI24585488, Length=265, Percent_Identity=32.8301886792453, Blast_Score=119, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43053; Mature: 43053

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQTLAGIVVLDLTRVLAGPFCSMLLADMGAEVIKIELPGKGDDSRSFAPFVNGESAYYM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEECCCCEEEE
NLNRNKQGMTLNLKSEQGRALFLRLVARADIVLENFRPGTMEKLALGYEQLRQVNPRLVY
EECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHCCCCEEH
GCVSGFGHYGPYAARAGYDIIGQAMGGMMSTTGWPDGEPTRCGTAIADVLAGLFMSTGVL
HHHHHCCCCCCHHHHCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AACHSAQRTGEGQKVDVALVDSVVAGMEIINQIYLVDGIVPGRNGNRYESIYPYDSFRCL
HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCEEEE
DGTLVIGAGNDKLYHALCHLMAQPELIDDPRFVTNPLRIRHSAALKAIVERWLADQMMDR
CCEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
AIERLLAVGIPAGPINTIDRVVQDPHIAGARQMFVDMQHPRAGKVTITGNPIKLSADEYR
HHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHEECCCCCCCEEEECCCCEEECHHHHC
APQASPALGEHSLAILQKHLGIDAEMFQALQREGVL
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MEQTLAGIVVLDLTRVLAGPFCSMLLADMGAEVIKIELPGKGDDSRSFAPFVNGESAYYM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEECCCCEEEE
NLNRNKQGMTLNLKSEQGRALFLRLVARADIVLENFRPGTMEKLALGYEQLRQVNPRLVY
EECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHCCCCEEH
GCVSGFGHYGPYAARAGYDIIGQAMGGMMSTTGWPDGEPTRCGTAIADVLAGLFMSTGVL
HHHHHCCCCCCHHHHCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AACHSAQRTGEGQKVDVALVDSVVAGMEIINQIYLVDGIVPGRNGNRYESIYPYDSFRCL
HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCEEEE
DGTLVIGAGNDKLYHALCHLMAQPELIDDPRFVTNPLRIRHSAALKAIVERWLADQMMDR
CCEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
AIERLLAVGIPAGPINTIDRVVQDPHIAGARQMFVDMQHPRAGKVTITGNPIKLSADEYR
HHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHEECCCCCCCEEEECCCCEEECHHHHC
APQASPALGEHSLAILQKHLGIDAEMFQALQREGVL
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]