| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is dinG [H]
Identifier: 238919205
GI number: 238919205
Start: 1273544
End: 1275784
Strand: Direct
Name: dinG [H]
Synonym: NT01EI_1288
Alternate gene names: 238919205
Gene position: 1273544-1275784 (Clockwise)
Preceding gene: 238919204
Following gene: 238919206
Centisome position: 33.41
GC content: 62.12
Gene sequence:
>2241_bases GTGGGGCGGGTGGCTGATTTTGTCCGCCCGCTGTGCGACAATAGCGCGCCATGTTTCCCGCAGCGAGTATCAATGACCCT TTCCAGCGCACTCAAAACCCAGATCTCCCAGTGGTATAAGGCCCTGGCGCAGCAAATTCCCGATTTTGTCACCCGTCCGC AGCAGCGGAAAATGATCGCTGAAGTCGCCCGGGCACTGAGCGGCATTGACGCCCGTCATTTGGTGATCGAGGCGCCGACC GGCGTCGGTAAAACCCTCTCCTATCTGTTGCCCGGCATTGCCATCAGTCGGGCACAGCAGAAGCCGCTGGTGGTGAGTAC CGCCAACGTAGCGTTACAGGATCAGATTTATACCCAGGATCTGCCGCTGCTGCGGCGAATTATCCCCGATCTGACTTTTA CCGCCGCCTTTGGCCGCGGTCGCTACGTGTGTCCGCGTAATTTGGCGGCGCTCTCCGAGCATCAGGATGGGCAGGGATCC CTGCTGCTGTTTATCGATGATGCGCTGCAGCCGGGCAGCGAGGAGGATCGGGCGCAGTGCCGCCGTCTGCAGGAAGAGCT GGAGAGCCGCCGCTGGGATGGGTTGCGCGACCATCTGCATGACAATCTGGATGATGGGCTATGGGCCAAGATGAGCACCG ATCGGGCCAGCTGCCTGAACCGCAGCTGTTCCCATTTTCGCCACTGCCCGTTTTTTCTGGCGCGGCGCGAAATTGAAAGC GCCGATGTGGTGGTAGCCAACCATGCGCTGGTGATGGCGGCGCTGGAGAGCGAGTCGGTGCTGCCGCCGCCGAAGGATCT GTTGCTGGTGCTGGATGAGGGGCACCATCTGCCCGATGTCGCCCGTGATGCGTTGGAGATGGAGGGTGAGATCACCGCTC TGTTTGTGCAGGGGCAGATCGATATGATCGTACGCCATATCGAACAGTGCCAGGCACAGTATCAGCCCAAGAATCCCCCG CGCTTGCTGGGCAGCGGGCGCCTGCAGGCGCACACGGCGGAGCTGCGTCAGCTGCTGACAGATTTCGATCGTGCTGCCGC CGGGCTGCTGGCCGGTGAGGAGCAGCACCGCTTTATTCTGGGCCAGCTGCCCGAAGCGCTGGGTGAGCTGGCACAGCGCC TGTATAAGCTGTGCGATGGTCTACGCGGCCTGAGCGAGTTTATGATGAACGACCTGCAGGAGAAGACCGGGACGCACGAT GCGCTACGGGTACAGCGCGCGCTGCTACAGATGAGCCGGGCGTTCAGCTACCTAGAGGCGCTGAGCAAGCTGTGGCGCCT GGCGGCACTGGATCAGGCCTCCAATGCACCGATCTCCAAATGGCTGACGCAAGAGCTCAGCGATGGCGTACACCACCGCT ACCTGCACTGCGTCGGGATCCGGGTATGCGATCAGCTGGAGCGCTTACTGTGGCGGCGTATTCCCCACGCGGTGATCACT TCGGCGACCCTGCGCTCCCTGAACCGCTTTGACCGCATCAGCGAGCTCTCTGGCCTGAACAGTCAGGCCGGCGATCGCTT TGTGGTGCTGGACTCGCCATTTGACCATGTACACCAAGGGTGTCTGGTGATCCCGCAGATGACGCTGGAGCCTACGTTGG CGCAGGAGGGAGAGCATTTACGTCAGATGGCTCACCTCTTCCGTGCGGCCTGGCTGCGTGGTGAACACACCGGTATGCTG GTGTTGTTTGCCAGCCAGCGGGCGATGCAGACTTTTTTAGGTTTTGTCCCGGATCTGCGCCTGGGGCTGCTGGTGCAGGG GGACCGTCCCCGCTATCGCCTGGTGGAAGAGCACTGTCGCCGGGTGCACGCAGGGACACAGAGCGCGCTGGTCGGGCTGC AGTCGTTTGCCGAGGGGCTGGATCTGAAGGGTGAGTTGTTGACCCAGGTGCATATTCATAAGGTAGCCTTTCCTCCGGTA GACAGCCCGGTGATCCTGACGGAGGGAGAGTGGCTGAAGTCGCATAACCGCTACCCCTTTGAGGTGCAAAGCCTGCCTGG TGCCTCTTTTACCCTGATCCAGCAGGTAGGGCGGCTGATCCGCAGCCACGCCTGCCGCGGCGAGATCGTCATCTACGATC GCCGCCTGCTGAGTAAACCGTATGGTAGCCGTCTGCTGGCCGCGCTGCCGGTGTTTCCTATCCTGCAGCCGCCGTTGCCG GAGGGGGAATTGCCTGCCTGGCCACAGCCCGTGGCGCAAAAGCGGGCCTCTCGCCACTCTGCCTCACGCCGTCGCCGCTA A
Upstream 100 bases:
>100_bases ATGGCTATCTGTGGCTGAATATGCAGCTGGCGATGCAGCTGGATGAGCTGCGCGATCTGTTGAGCAACGTATTGCGCCGC TGATCGGCGCCGGGACAACG
Downstream 100 bases:
>100_bases CGCAGCAGAGCGGATAGCCGCAATTATCATACTAAATCATTGCCTGCGATAAAATTCTTATGTAGAATCCAAAAAGTATA ACCGTTTGAAATAATTATAT
Product: ATP-dependent DNA helicase DinG
Products: NA
Alternate protein names: DNA-damage-inducible protein G [H]
Number of amino acids: Translated: 746; Mature: 745
Protein sequence:
>746_residues MGRVADFVRPLCDNSAPCFPQRVSMTLSSALKTQISQWYKALAQQIPDFVTRPQQRKMIAEVARALSGIDARHLVIEAPT GVGKTLSYLLPGIAISRAQQKPLVVSTANVALQDQIYTQDLPLLRRIIPDLTFTAAFGRGRYVCPRNLAALSEHQDGQGS LLLFIDDALQPGSEEDRAQCRRLQEELESRRWDGLRDHLHDNLDDGLWAKMSTDRASCLNRSCSHFRHCPFFLARREIES ADVVVANHALVMAALESESVLPPPKDLLLVLDEGHHLPDVARDALEMEGEITALFVQGQIDMIVRHIEQCQAQYQPKNPP RLLGSGRLQAHTAELRQLLTDFDRAAAGLLAGEEQHRFILGQLPEALGELAQRLYKLCDGLRGLSEFMMNDLQEKTGTHD ALRVQRALLQMSRAFSYLEALSKLWRLAALDQASNAPISKWLTQELSDGVHHRYLHCVGIRVCDQLERLLWRRIPHAVIT SATLRSLNRFDRISELSGLNSQAGDRFVVLDSPFDHVHQGCLVIPQMTLEPTLAQEGEHLRQMAHLFRAAWLRGEHTGML VLFASQRAMQTFLGFVPDLRLGLLVQGDRPRYRLVEEHCRRVHAGTQSALVGLQSFAEGLDLKGELLTQVHIHKVAFPPV DSPVILTEGEWLKSHNRYPFEVQSLPGASFTLIQQVGRLIRSHACRGEIVIYDRRLLSKPYGSRLLAALPVFPILQPPLP EGELPAWPQPVAQKRASRHSASRRRR
Sequences:
>Translated_746_residues MGRVADFVRPLCDNSAPCFPQRVSMTLSSALKTQISQWYKALAQQIPDFVTRPQQRKMIAEVARALSGIDARHLVIEAPT GVGKTLSYLLPGIAISRAQQKPLVVSTANVALQDQIYTQDLPLLRRIIPDLTFTAAFGRGRYVCPRNLAALSEHQDGQGS LLLFIDDALQPGSEEDRAQCRRLQEELESRRWDGLRDHLHDNLDDGLWAKMSTDRASCLNRSCSHFRHCPFFLARREIES ADVVVANHALVMAALESESVLPPPKDLLLVLDEGHHLPDVARDALEMEGEITALFVQGQIDMIVRHIEQCQAQYQPKNPP RLLGSGRLQAHTAELRQLLTDFDRAAAGLLAGEEQHRFILGQLPEALGELAQRLYKLCDGLRGLSEFMMNDLQEKTGTHD ALRVQRALLQMSRAFSYLEALSKLWRLAALDQASNAPISKWLTQELSDGVHHRYLHCVGIRVCDQLERLLWRRIPHAVIT SATLRSLNRFDRISELSGLNSQAGDRFVVLDSPFDHVHQGCLVIPQMTLEPTLAQEGEHLRQMAHLFRAAWLRGEHTGML VLFASQRAMQTFLGFVPDLRLGLLVQGDRPRYRLVEEHCRRVHAGTQSALVGLQSFAEGLDLKGELLTQVHIHKVAFPPV DSPVILTEGEWLKSHNRYPFEVQSLPGASFTLIQQVGRLIRSHACRGEIVIYDRRLLSKPYGSRLLAALPVFPILQPPLP EGELPAWPQPVAQKRASRHSASRRRR >Mature_745_residues GRVADFVRPLCDNSAPCFPQRVSMTLSSALKTQISQWYKALAQQIPDFVTRPQQRKMIAEVARALSGIDARHLVIEAPTG VGKTLSYLLPGIAISRAQQKPLVVSTANVALQDQIYTQDLPLLRRIIPDLTFTAAFGRGRYVCPRNLAALSEHQDGQGSL LLFIDDALQPGSEEDRAQCRRLQEELESRRWDGLRDHLHDNLDDGLWAKMSTDRASCLNRSCSHFRHCPFFLARREIESA DVVVANHALVMAALESESVLPPPKDLLLVLDEGHHLPDVARDALEMEGEITALFVQGQIDMIVRHIEQCQAQYQPKNPPR LLGSGRLQAHTAELRQLLTDFDRAAAGLLAGEEQHRFILGQLPEALGELAQRLYKLCDGLRGLSEFMMNDLQEKTGTHDA LRVQRALLQMSRAFSYLEALSKLWRLAALDQASNAPISKWLTQELSDGVHHRYLHCVGIRVCDQLERLLWRRIPHAVITS ATLRSLNRFDRISELSGLNSQAGDRFVVLDSPFDHVHQGCLVIPQMTLEPTLAQEGEHLRQMAHLFRAAWLRGEHTGMLV LFASQRAMQTFLGFVPDLRLGLLVQGDRPRYRLVEEHCRRVHAGTQSALVGLQSFAEGLDLKGELLTQVHIHKVAFPPVD SPVILTEGEWLKSHNRYPFEVQSLPGASFTLIQQVGRLIRSHACRGEIVIYDRRLLSKPYGSRLLAALPVFPILQPPLPE GELPAWPQPVAQKRASRHSASRRRR
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787018, Length=724, Percent_Identity=62.4309392265193, Blast_Score=931, Evalue=0.0, Organism=Escherichia coli, GI1788110, Length=685, Percent_Identity=28.9051094890511, Blast_Score=178, Evalue=1e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR010614 - InterPro: IPR011545 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF00270 DEAD; PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 83874; Mature: 83743
Theoretical pI: Translated: 8.14; Mature: 8.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRVADFVRPLCDNSAPCFPQRVSMTLSSALKTQISQWYKALAQQIPDFVTRPQQRKMIA CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHH EVARALSGIDARHLVIEAPTGVGKTLSYLLPGIAISRAQQKPLVVSTANVALQDQIYTQD HHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCHHHHHHCCCCEEEEECCHHHHHHHHHCC LPLLRRIIPDLTFTAAFGRGRYVCPRNLAALSEHQDGQGSLLLFIDDALQPGSEEDRAQC HHHHHHHHCCCCEEHHCCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHH RRLQEELESRRWDGLRDHLHDNLDDGLWAKMSTDRASCLNRSCSHFRHCPFFLARREIES HHHHHHHHHHCCCHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCHHHHHHHHCCC ADVVVANHALVMAALESESVLPPPKDLLLVLDEGHHLPDVARDALEMEGEITALFVQGQI CCEEEECHHHEEEECCCCCCCCCCHHEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHH DMIVRHIEQCQAQYQPKNPPRLLGSGRLQAHTAELRQLLTDFDRAAAGLLAGEEQHRFIL HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH GQLPEALGELAQRLYKLCDGLRGLSEFMMNDLQEKTGTHDALRVQRALLQMSRAFSYLEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH LSKLWRLAALDQASNAPISKWLTQELSDGVHHRYLHCVGIRVCDQLERLLWRRIPHAVIT HHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH SATLRSLNRFDRISELSGLNSQAGDRFVVLDSPFDHVHQGCLVIPQMTLEPTLAQEGEHL HHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHCCCCEEECCCCCCCHHHHHHHHH RQMAHLFRAAWLRGEHTGMLVLFASQRAMQTFLGFVPDLRLGLLVQGDRPRYRLVEEHCR HHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH RVHAGTQSALVGLQSFAEGLDLKGELLTQVHIHKVAFPPVDSPVILTEGEWLKSHNRYPF HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCEEEECCHHHHCCCCCCE EVQSLPGASFTLIQQVGRLIRSHACRGEIVIYDRRLLSKPYGSRLLAALPVFPILQPPLP EECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCHHHHHHHHCHHHCCCCCCC EGELPAWPQPVAQKRASRHSASRRRR CCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure GRVADFVRPLCDNSAPCFPQRVSMTLSSALKTQISQWYKALAQQIPDFVTRPQQRKMIA CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHH EVARALSGIDARHLVIEAPTGVGKTLSYLLPGIAISRAQQKPLVVSTANVALQDQIYTQD HHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCHHHHHHCCCCEEEEECCHHHHHHHHHCC LPLLRRIIPDLTFTAAFGRGRYVCPRNLAALSEHQDGQGSLLLFIDDALQPGSEEDRAQC HHHHHHHHCCCCEEHHCCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHH RRLQEELESRRWDGLRDHLHDNLDDGLWAKMSTDRASCLNRSCSHFRHCPFFLARREIES HHHHHHHHHHCCCHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCHHHHHHHHCCC ADVVVANHALVMAALESESVLPPPKDLLLVLDEGHHLPDVARDALEMEGEITALFVQGQI CCEEEECHHHEEEECCCCCCCCCCHHEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHH DMIVRHIEQCQAQYQPKNPPRLLGSGRLQAHTAELRQLLTDFDRAAAGLLAGEEQHRFIL HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH GQLPEALGELAQRLYKLCDGLRGLSEFMMNDLQEKTGTHDALRVQRALLQMSRAFSYLEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH LSKLWRLAALDQASNAPISKWLTQELSDGVHHRYLHCVGIRVCDQLERLLWRRIPHAVIT HHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH SATLRSLNRFDRISELSGLNSQAGDRFVVLDSPFDHVHQGCLVIPQMTLEPTLAQEGEHL HHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHCCCCEEECCCCCCCHHHHHHHHH RQMAHLFRAAWLRGEHTGMLVLFASQRAMQTFLGFVPDLRLGLLVQGDRPRYRLVEEHCR HHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH RVHAGTQSALVGLQSFAEGLDLKGELLTQVHIHKVAFPPVDSPVILTEGEWLKSHNRYPF HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCEEEECCHHHHCCCCCCE EVQSLPGASFTLIQQVGRLIRSHACRGEIVIYDRRLLSKPYGSRLLAALPVFPILQPPLP EECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCHHHHHHHHCHHHCCCCCCC EGELPAWPQPVAQKRASRHSASRRRR CCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]