Click here to switch to the map view.

The map label for this gene is ybaO [H]

Identifier: 238919021

GI number: 238919021

Start: 1085725

End: 1086186

Strand: Direct

Name: ybaO [H]

Synonym: NT01EI_1088

Alternate gene names: 238919021

Gene position: 1085725-1086186 (Clockwise)

Preceding gene: 238919020

Following gene: 238919023

Centisome position: 28.48

GC content: 51.52

Gene sequence:

>462_bases
ATGCTGGATAAAATTGACCGTAGTCTGCTGAATATGCTACAGCGGGATTGCACCCTCTCCCTGCAGGTGCTGTCAGAAGC
GGTTAACCTGACGTCGACCCCCTGCTGGAAGCGGCTAAAGCGTCTGGAGGAGGAGGGCTATATTACCCAACGGGTCGCGC
TGTTGGATAAAGAGAAGCTTGGACTGGGGCTAACGGCGTTTGTGGCGATAAAGACCCAGCACCACAGCGCGGAGTGGTAT
CGTAACTTTGTGCAGCAAGTGGAATATATACCGGAGATCCTAGCATTTTACCGTATGGCCGGCGAATACGATTACCTGAT
GCAGGTGCAGGTTTCTGATATGAAAAGCTTCGATGATTTTTATAAGCGTCTGGTCAACTCGGTAAAGGGGTTGAGCGATG
TCACGTCGAGTTTTGCCATGGAGCAGATTAAGTTTACTACGGCGCTGCCGCTGCGTGAGTAG

Upstream 100 bases:

>100_bases
TTATTTTTTCTGGCGTCGGATATCCGATGGAACGGGAAAAGATTGATTATTATTGCGTGTAGCGGCCTAATTGGAGGAAA
TCTTTCTCCTGGAGGCCCCT

Downstream 100 bases:

>100_bases
AGTGCCTTTCCCGCCAGCGGTCACCGGCTCACCCCGGTGACCTGCCCCCCATTTCCTGCAGATATTCCTCACTCAGCGAT
ACCCACGTTGGGGAGATCTG

Product: transcriptional regulator, AsnC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MLDKIDRSLLNMLQRDCTLSLQVLSEAVNLTSTPCWKRLKRLEEEGYITQRVALLDKEKLGLGLTAFVAIKTQHHSAEWY
RNFVQQVEYIPEILAFYRMAGEYDYLMQVQVSDMKSFDDFYKRLVNSVKGLSDVTSSFAMEQIKFTTALPLRE

Sequences:

>Translated_153_residues
MLDKIDRSLLNMLQRDCTLSLQVLSEAVNLTSTPCWKRLKRLEEEGYITQRVALLDKEKLGLGLTAFVAIKTQHHSAEWY
RNFVQQVEYIPEILAFYRMAGEYDYLMQVQVSDMKSFDDFYKRLVNSVKGLSDVTSSFAMEQIKFTTALPLRE
>Mature_153_residues
MLDKIDRSLLNMLQRDCTLSLQVLSEAVNLTSTPCWKRLKRLEEEGYITQRVALLDKEKLGLGLTAFVAIKTQHHSAEWY
RNFVQQVEYIPEILAFYRMAGEYDYLMQVQVSDMKSFDDFYKRLVNSVKGLSDVTSSFAMEQIKFTTALPLRE

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=75.4966887417219, Blast_Score=245, Evalue=7e-67,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=33.1081081081081, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17814; Mature: 17814

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKIDRSLLNMLQRDCTLSLQVLSEAVNLTSTPCWKRLKRLEEEGYITQRVALLDKEKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
GLGLTAFVAIKTQHHSAEWYRNFVQQVEYIPEILAFYRMAGEYDYLMQVQVSDMKSFDDF
CCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
YKRLVNSVKGLSDVTSSFAMEQIKFTTALPLRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLDKIDRSLLNMLQRDCTLSLQVLSEAVNLTSTPCWKRLKRLEEEGYITQRVALLDKEKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
GLGLTAFVAIKTQHHSAEWYRNFVQQVEYIPEILAFYRMAGEYDYLMQVQVSDMKSFDDF
CCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
YKRLVNSVKGLSDVTSSFAMEQIKFTTALPLRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]