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The map label for this gene is ybaV [C]

Identifier: 238919017

GI number: 238919017

Start: 1081772

End: 1082116

Strand: Direct

Name: ybaV [C]

Synonym: NT01EI_1084

Alternate gene names: 238919017

Gene position: 1081772-1082116 (Clockwise)

Preceding gene: 238919016

Following gene: 238919020

Centisome position: 28.38

GC content: 61.16

Gene sequence:

>345_bases
ATGAATCCGTTAACTCTGTTGTTATCTTCTCCACTCTGGATCGCGCTACTCTTTTTTCCCTCTGTACCGCAGGCGGCTAC
GGCCCCCACCTCTGTACCGTCCACAAGCTCCGTCACGCACAGCAGCGGGGCTGTGGAGAGCGCCGAACACGGGCGGGTCA
ATATCAATCAGGCGTCAGCGCAGGCGCTGTCTGAGGGGCTCAGCGGCATCGGCCTGGAGAAGGCCCGGGCGATCGTCGCC
TTTCGTGAGCAGCATGGCGTGTTTTCCCGTTTGGAACAATTGCTACAGGTGAAGGGGATTGGCGCTGCGCTGCTGGAGAA
GAACCGGGCGCGCCTGGCGCTCTAG

Upstream 100 bases:

>100_bases
CATTCGCGGCCTTTTGCATATTGCGCTATCCGGCTTTGCCGGACCCATCTCAGAAGGGCATTGTAAGAGGCGACTACCAT
TATCCCTAAGGAGCCCTGCC

Downstream 100 bases:

>100_bases
TGATAGCGCGGCACCGATCTGCGTATGGGTCGGCGCTGCGCAGTCTCCTCGTTTGGCGTAGGGTGGCGAAAGGGGGCGTT
ACTGCAGTCCACTCTTGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MNPLTLLLSSPLWIALLFFPSVPQAATAPTSVPSTSSVTHSSGAVESAEHGRVNINQASAQALSEGLSGIGLEKARAIVA
FREQHGVFSRLEQLLQVKGIGAALLEKNRARLAL

Sequences:

>Translated_114_residues
MNPLTLLLSSPLWIALLFFPSVPQAATAPTSVPSTSSVTHSSGAVESAEHGRVNINQASAQALSEGLSGIGLEKARAIVA
FREQHGVFSRLEQLLQVKGIGAALLEKNRARLAL
>Mature_114_residues
MNPLTLLLSSPLWIALLFFPSVPQAATAPTSVPSTSSVTHSSGAVESAEHGRVNINQASAQALSEGLSGIGLEKARAIVA
FREQHGVFSRLEQLLQVKGIGAALLEKNRARLAL

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=92, Percent_Identity=40.2173913043478, Blast_Score=70, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11970; Mature: 11970

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPLTLLLSSPLWIALLFFPSVPQAATAPTSVPSTSSVTHSSGAVESAEHGRVNINQASA
CCCHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHH
QALSEGLSGIGLEKARAIVAFREQHGVFSRLEQLLQVKGIGAALLEKNRARLAL
HHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MNPLTLLLSSPLWIALLFFPSVPQAATAPTSVPSTSSVTHSSGAVESAEHGRVNINQASA
CCCHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHH
QALSEGLSGIGLEKARAIVAFREQHGVFSRLEQLLQVKGIGAALLEKNRARLAL
HHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]