Click here to switch to the map view.

The map label for this gene is secF [H]

Identifier: 238918975

GI number: 238918975

Start: 1038687

End: 1039655

Strand: Direct

Name: secF [H]

Synonym: NT01EI_1042

Alternate gene names: 238918975

Gene position: 1038687-1039655 (Clockwise)

Preceding gene: 238918974

Following gene: 238918979

Centisome position: 27.25

GC content: 58.0

Gene sequence:

>969_bases
ATGGCACAAGAATATACCGTTGAACAACTTAACCATGGGCGTAAAGTCATCGACTTTATGCGCTGGGATTACGTTGCTTT
TACGCTTTCCGGGCTGTTGTTGCTGGCCTCCTGTCTGGTGATGTACGTGAAGGGCTTCAACTGGGGTCTGGACTTCACCG
GCGGGACGGTGATTGAGCTGACGGTGGAAAAGGCACCGGATCTCAACGCGATGCGTGCCTCTCTGGTGAAGTCAGGCTTT
GACGAGCCGGTGGTGCAGAACTTCGGCAGCAGCCGCGACATCATGATCCGCATGGCGCCGATTAGTGGCAATGAGGGGCA
GGAGCTGGGTAACCGGATCGTGGCGGTGGTTGAGCAGGTCATCGATGGCAATGCTTCCGTTAAGCGTATTGAGTTCGTCG
GTCCGAGCGTGGGCAGCGATCTGGCACAGGCCGGCGGCATGGCGCTGCTGGTGGCGCTGATCAGTATCCTGATCTATGTC
GGCTTCCGCTTCGAGTGGCGTCTGGCCCTCGGTGCGGTGCTGGCGCTGGCGCACGACGTGGTGATCACGCTCGGGGTGCT
GTCGTTGTTCCATATCGAGATCGATCTGACCATCGTGGCGTCGCTGATGTCGGTTATCGGCTACTCGCTTAACGACAGTA
TCGTGGTCTCTGACCGTATCCGCGAAAACTTCCGTAAGATCCGCCGCGGTACGCCGTATGAGATCGTGAACGTTTCGCTG
ACGCAGACCCTGAGCCGTACCATCATGACCTCCGCCACCACGCTGGTGGTGGTGCTGTGTCTGTACATCTTTGGCGGCGC
GATGCTGAAAGGCTTCTCGCTGACCATGCTGATCGGGGTCTCTATCGGTACCGTGTCGTCTATCTATGTCGCCTCGGCAC
TGGCGTTGAAGCTGGGTATGAAGCGTGAGCACATGCTGCAGCAGAAAGTGGAGAAAGAGGGCGCCGATCAGCCTTCGCTG
CTGCCATAA

Upstream 100 bases:

>100_bases
CAACCTCGATGTTTACCGCCATTGTCGGTACCCGCGCCATTGTCAACCTGCTGTACGGCGGCAAGCGCATCAACAAGCTG
TCTATCTGAGGGGTTAGGGA

Downstream 100 bases:

>100_bases
GCGATGCGCATGGCTGCCTGGGCGGCCAGCGCAGAGGGAATAATCCGCCATTACAGTCCGTAATGGCGGATTTTTTTATA
CAGCGTACCGCGAGAGATCC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MAQEYTVEQLNHGRKVIDFMRWDYVAFTLSGLLLLASCLVMYVKGFNWGLDFTGGTVIELTVEKAPDLNAMRASLVKSGF
DEPVVQNFGSSRDIMIRMAPISGNEGQELGNRIVAVVEQVIDGNASVKRIEFVGPSVGSDLAQAGGMALLVALISILIYV
GFRFEWRLALGAVLALAHDVVITLGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIVNVSL
TQTLSRTIMTSATTLVVVLCLYIFGGAMLKGFSLTMLIGVSIGTVSSIYVASALALKLGMKREHMLQQKVEKEGADQPSL
LP

Sequences:

>Translated_322_residues
MAQEYTVEQLNHGRKVIDFMRWDYVAFTLSGLLLLASCLVMYVKGFNWGLDFTGGTVIELTVEKAPDLNAMRASLVKSGF
DEPVVQNFGSSRDIMIRMAPISGNEGQELGNRIVAVVEQVIDGNASVKRIEFVGPSVGSDLAQAGGMALLVALISILIYV
GFRFEWRLALGAVLALAHDVVITLGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIVNVSL
TQTLSRTIMTSATTLVVVLCLYIFGGAMLKGFSLTMLIGVSIGTVSSIYVASALALKLGMKREHMLQQKVEKEGADQPSL
LP
>Mature_321_residues
AQEYTVEQLNHGRKVIDFMRWDYVAFTLSGLLLLASCLVMYVKGFNWGLDFTGGTVIELTVEKAPDLNAMRASLVKSGFD
EPVVQNFGSSRDIMIRMAPISGNEGQELGNRIVAVVEQVIDGNASVKRIEFVGPSVGSDLAQAGGMALLVALISILIYVG
FRFEWRLALGAVLALAHDVVITLGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIVNVSLT
QTLSRTIMTSATTLVVVLCLYIFGGAMLKGFSLTMLIGVSIGTVSSIYVASALALKLGMKREHMLQQKVEKEGADQPSLL
P

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=323, Percent_Identity=77.0897832817337, Blast_Score=518, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35052; Mature: 34921

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQEYTVEQLNHGRKVIDFMRWDYVAFTLSGLLLLASCLVMYVKGFNWGLDFTGGTVIEL
CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEE
TVEKAPDLNAMRASLVKSGFDEPVVQNFGSSRDIMIRMAPISGNEGQELGNRIVAVVEQV
EECCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
IDGNASVKRIEFVGPSVGSDLAQAGGMALLVALISILIYVGFRFEWRLALGAVLALAHDV
HCCCCCEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VITLGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIVNVSL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEHHH
TQTLSRTIMTSATTLVVVLCLYIFGGAMLKGFSLTMLIGVSIGTVSSIYVASALALKLGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KREHMLQQKVEKEGADQPSLLP
CHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AQEYTVEQLNHGRKVIDFMRWDYVAFTLSGLLLLASCLVMYVKGFNWGLDFTGGTVIEL
CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEE
TVEKAPDLNAMRASLVKSGFDEPVVQNFGSSRDIMIRMAPISGNEGQELGNRIVAVVEQV
EECCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
IDGNASVKRIEFVGPSVGSDLAQAGGMALLVALISILIYVGFRFEWRLALGAVLALAHDV
HCCCCCEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VITLGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIVNVSL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEHHH
TQTLSRTIMTSATTLVVVLCLYIFGGAMLKGFSLTMLIGVSIGTVSSIYVASALALKLGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KREHMLQQKVEKEGADQPSLLP
CHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]