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The map label for this gene is secD [H]

Identifier: 238918974

GI number: 238918974

Start: 1036852

End: 1038675

Strand: Direct

Name: secD [H]

Synonym: NT01EI_1041

Alternate gene names: 238918974

Gene position: 1036852-1038675 (Clockwise)

Preceding gene: 238918973

Following gene: 238918975

Centisome position: 27.2

GC content: 58.94

Gene sequence:

>1824_bases
ATGCTGATCGTGGCGCTGGTCATCGGTCTGCTGTATGCGCTCCCTAACCTTTATGGCGAGGATCCGGCTGTTCAAATCAC
TGGCGCGCGCGGTGTCGCCGCCAGTGAGTCAACACTGGTCCAAGTCCGTGATGTGCTTGAAAAACAGCATATCCCCAGCA
AATCCATTGCGCTGGAAAATGGTGCCATTCTGGCACGCTTTACTGATACCGACATTCAGCTGCGGGCGCGCGAAGCGCTG
GTCGATACGCTGGGTGACAAATATGTCGTCGCACTCAACCTGGCGCCTGCTACCCCGAAATGGCTGGCGATGGTCGGCGC
CGAGCCGATGAAGCTGGGCCTTGATCTGCGCGGTGGCGTGCATTTCCTGATGCAGGTGGACATGGATACTGCGCTGAGCA
AGCTGCAGGAACAGACCATGGATACCCTGCGCAGCGATCTGCGTGACAAAGGCATTCCTTACTCTACCATCCGTAAACTG
CCCGATCCCGCCAGCGGAGGCGTGGAGATCAACTTCCGTGACGCCGCCGCCCGCGATGCGGCCAGCGATTACCTCTCTCC
GCGCCACCGGGATCTGGTCTTCAGTAACGTGGGTGACACGATGCTGAAGGCGGTGATGACGGACGATCGTCTGCGTGAGG
CCCGTGAGTATGCGGTACAGCAGAACATTAATATCCTGCGTAACCGTGTGAACCAACTGGGTGTTGCCGAACCGCTGGTA
CAGCGTCAGGGCGCCGATCGTATCGTGGTTGAGCTGCCGGGTATCCAGGACACGGCGCGTGCTAAAGAGATTCTGGGTGC
GACCGCGACGCTGGAGTTCCGTCTGGTCAACAGCAACGTGGATGCGCAGGCCGCCGCCAGCGGTCGCGTACCGGGTGACT
CTGAGGTCAAATATACCCGTGACGGTCGTCCGGTGGTGCTCTACAAGCGGGTGATCCTGACCGGTGACCACATCACTGAT
TCCACCTCCAGCCAGGATGAGTTTAACCGTCCGCAGGTTAACATCTCCCTCGACAGCGCCGGTGGCAGCGCCATGTCCAA
CTTCACCAAGGACAATATCGGCAAGCCGATGGCGACCCTGTTTGTGGAATATAAGGACAGCGGCAAGAAAGACGCCAGCG
GCAAGCCGATCCTGGAGAAGCAGGAAGAGGTGATCAACGTGGCGACGATCCAGTCGCGCCTGGGTAACAGCTTCCGGATT
ACCGGTATCGATAACCCGGCTGAGGCCCGTCAGCTCTCCCTGCTGCTGCGCGCCGGTGCGCTGATCGCACCGATCCAGAT
CGTGGAGGAGCGGACCATCGGCCCAACCCTGGGAATGCAGAACATTGAGCAGGGGCTGGAAGCCTGCCTGTGGGGGCTTA
TCGCATCGATCATCTTTATGGTGGTGTTCTACAAGAAATTCGGTCTGATCGCGACCACCGCACTGCTGGCTAACCTGGTG
ATGATCGTCGGGATTATGTCGCTGTTGCCGGGGGCCACACTGACCATGCCGGGTATTGCGGGGATCGTGCTAACCCTTGC
GGTAGCGGTTGACGCCAACGTACTGATAAATGAGCGTATCAAGGAGGAGCTGCGCAACGGGCGGACCGTTCAGCAGGCGA
TCCATGAGGGGTATAAAGGCGCGTTTTCCAGTATTATCGATGCCAACGTGACCACGCTGATTACCGCAGTGATCCTGTAC
GCCGTGGGCACCGGCTCCATCAAGGGCTTTGCCATCACCACCGCTATCGGTGTGGCAACCTCGATGTTTACCGCCATTGT
CGGTACCCGCGCCATTGTCAACCTGCTGTACGGCGGCAAGCGCATCAACAAGCTGTCTATCTGA

Upstream 100 bases:

>100_bases
GACCGCTGTCCTGCCGAAAGGTACGATGAAAGCGCTGTAATTTTCGATTTTCCCTAAGGGAACTGCCGTGTTAAACCGTT
ATCCTTTGTGGAAGTACATC

Downstream 100 bases:

>100_bases
GGGGTTAGGGAATGGCACAAGAATATACCGTTGAACAACTTAACCATGGGCGTAAAGTCATCGACTTTATGCGCTGGGAT
TACGTTGCTTTTACGCTTTC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 607; Mature: 607

Protein sequence:

>607_residues
MLIVALVIGLLYALPNLYGEDPAVQITGARGVAASESTLVQVRDVLEKQHIPSKSIALENGAILARFTDTDIQLRAREAL
VDTLGDKYVVALNLAPATPKWLAMVGAEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLRDKGIPYSTIRKL
PDPASGGVEINFRDAAARDAASDYLSPRHRDLVFSNVGDTMLKAVMTDDRLREAREYAVQQNINILRNRVNQLGVAEPLV
QRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDAQAAASGRVPGDSEVKYTRDGRPVVLYKRVILTGDHITD
STSSQDEFNRPQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKKDASGKPILEKQEEVINVATIQSRLGNSFRI
TGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLWGLIASIIFMVVFYKKFGLIATTALLANLV
MIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILY
AVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI

Sequences:

>Translated_607_residues
MLIVALVIGLLYALPNLYGEDPAVQITGARGVAASESTLVQVRDVLEKQHIPSKSIALENGAILARFTDTDIQLRAREAL
VDTLGDKYVVALNLAPATPKWLAMVGAEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLRDKGIPYSTIRKL
PDPASGGVEINFRDAAARDAASDYLSPRHRDLVFSNVGDTMLKAVMTDDRLREAREYAVQQNINILRNRVNQLGVAEPLV
QRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDAQAAASGRVPGDSEVKYTRDGRPVVLYKRVILTGDHITD
STSSQDEFNRPQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKKDASGKPILEKQEEVINVATIQSRLGNSFRI
TGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLWGLIASIIFMVVFYKKFGLIATTALLANLV
MIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILY
AVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI
>Mature_607_residues
MLIVALVIGLLYALPNLYGEDPAVQITGARGVAASESTLVQVRDVLEKQHIPSKSIALENGAILARFTDTDIQLRAREAL
VDTLGDKYVVALNLAPATPKWLAMVGAEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLRDKGIPYSTIRKL
PDPASGGVEINFRDAAARDAASDYLSPRHRDLVFSNVGDTMLKAVMTDDRLREAREYAVQQNINILRNRVNQLGVAEPLV
QRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDAQAAASGRVPGDSEVKYTRDGRPVVLYKRVILTGDHITD
STSSQDEFNRPQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKKDASGKPILEKQEEVINVATIQSRLGNSFRI
TGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLWGLIASIIFMVVFYKKFGLIATTALLANLV
MIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILY
AVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=607, Percent_Identity=82.8665568369028, Blast_Score=1020, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65385; Mature: 65385

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIVALVIGLLYALPNLYGEDPAVQITGARGVAASESTLVQVRDVLEKQHIPSKSIALEN
CCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECC
GAILARFTDTDIQLRAREALVDTLGDKYVVALNLAPATPKWLAMVGAEPMKLGLDLRGGV
CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCHHHCCCCCCCCE
HFLMQVDMDTALSKLQEQTMDTLRSDLRDKGIPYSTIRKLPDPASGGVEINFRDAAARDA
EEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEEECHHHHHHH
ASDYLSPRHRDLVFSNVGDTMLKAVMTDDRLREAREYAVQQNINILRNRVNQLGVAEPLV
HHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
QRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDAQAAASGRVPGDSEVKYTR
HHCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEEEECCCCCCHHHCCCCCCCCCCEEEEC
DGRPVVLYKRVILTGDHITDSTSSQDEFNRPQVNISLDSAGGSAMSNFTKDNIGKPMATL
CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCHHHCCCCHHHH
FVEYKDSGKKDASGKPILEKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGA
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
LIAPIQIVEERTIGPTLGMQNIEQGLEACLWGLIASIIFMVVFYKKFGLIATTALLANLV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKG
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
AFSSIIDANVTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGK
HHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RINKLSI
CCCCCCC
>Mature Secondary Structure
MLIVALVIGLLYALPNLYGEDPAVQITGARGVAASESTLVQVRDVLEKQHIPSKSIALEN
CCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECC
GAILARFTDTDIQLRAREALVDTLGDKYVVALNLAPATPKWLAMVGAEPMKLGLDLRGGV
CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCHHHCCCCCCCCE
HFLMQVDMDTALSKLQEQTMDTLRSDLRDKGIPYSTIRKLPDPASGGVEINFRDAAARDA
EEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEEECHHHHHHH
ASDYLSPRHRDLVFSNVGDTMLKAVMTDDRLREAREYAVQQNINILRNRVNQLGVAEPLV
HHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
QRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDAQAAASGRVPGDSEVKYTR
HHCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEEEECCCCCCHHHCCCCCCCCCCEEEEC
DGRPVVLYKRVILTGDHITDSTSSQDEFNRPQVNISLDSAGGSAMSNFTKDNIGKPMATL
CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCHHHCCCCHHHH
FVEYKDSGKKDASGKPILEKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGA
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
LIAPIQIVEERTIGPTLGMQNIEQGLEACLWGLIASIIFMVVFYKKFGLIATTALLANLV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKG
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
AFSSIIDANVTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGK
HHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RINKLSI
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]