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The map label for this gene is ydjA [H]

Identifier: 238917711

GI number: 238917711

Start: 1850490

End: 1851659

Strand: Reverse

Name: ydjA [H]

Synonym: EUBELI_01791

Alternate gene names: 238917711

Gene position: 1851659-1850490 (Counterclockwise)

Preceding gene: 238917712

Following gene: 238917710

Centisome position: 86.36

GC content: 31.62

Gene sequence:

>1170_bases
ATGGATACATTTGTAGGGTTAAGATGTAATGATGGTGACATAAGTATCAATTTTCCGCTTGGATATCATATATCTGAAGA
TGACAATGAGCTTCGCAAGGATATAATGCTCTTACTTACAACACTTTCAGCTAACACAGAACGAAAAGAGTCAGAAATTC
TTAAGCAAGGTAATGCTTTTGATGAAGTAGAATTTCCATTGCAGTCATATATGTATCTTATAAAGGATTTTTTTGTACGA
GGTTATTATAAGGAGCAGGAAGTTTTATATAAAGTTGCTAAATCGGGAAAGATCAATTGGAACAGGACAATAAAGACCCA
GAAACCATATGTACAGGATATGGACGTGTTTTATCTTGATTTCGTTACAAAGAAGAATAGTGTAAAAGAGAATGAACTGA
TTACATTAATACATGAGTATTGTGTATATGAAAGCTTTGAACGGATAGGCTGGCTCTATACGGAAATGATGCCGAAGAAA
CCAGTAATTGTTAAACAGGAAAGGTTATTCCGTTCTGTTCTTAAAGATAAAATTGCCAATACTTTTAATGATAAAAACAG
GATGCTATTCCGTCATATGCTTGCAATTATTGATTTTGAAGGAGATAAAGATTCTGATAAAAACTACAGATATGGAACAT
ATCGTTTTGAATATATATGGGAGAAAATGATTGATAAGGTATTTGGCATTGAGAATAAAGCAGATTATTTTCCTAAAACA
ACATGGTATGTTAATGGAAGTAAATATGATAATGCTTCACTTGAACCAGATACGGTTATGTTGTATGGAACAGATGTATA
TGTACTTGATGCAAAATATTATAAATATGGGGTAACAGGAAAGACCTGGGATCTGCCAGAATCCACATCAATAAATAAGC
AGATTACATATGGTGAATATATAGCAAATGAGGATAAATTTAAGAAAAAGCATGGAGAAAATATGAAAGTATATAATGCT
TTTCTTATGCCTTTTGATTCATTAAAAAGTAAATATCCGAATAATGCAAATATGCTCAAAGTTGGTCAAGCGGTAAGTAA
CTGGAAAGATAATACTGAAGAATATCATAAAATTCAAGGTGTTCTTCTTGATGTAAAGACTCTTATGAGCATAAATGTCA
GACAGGAAATGAAAGAGATAGAAAAATTGGCAAAATTGATTGAAAACTGA

Upstream 100 bases:

>100_bases
AAATGCAACAAAAGAATACAGATAATAATGAAAACTAGGTGGTGATTTTTTGAGGAAAGTTGATATTCGAAGTAAATGCA
GAGTGAATTCTAATCGTGAA

Downstream 100 bases:

>100_bases
TTGTTGAGGTGATTTTGTGGCGGATGTTTTAACAAAAGAACAGCGGCATAAGAATATGAAAAATATTCATGGAAAGGATA
CCAAAATAGAAGTTATATTG

Product: hypothetical protein

Products: NA

Alternate protein names: R.BsuM; R.BsuMI; Endonuclease BsuMI component ydjA; Type II restriction enzyme BsuMI component ydjA [H]

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MDTFVGLRCNDGDISINFPLGYHISEDDNELRKDIMLLLTTLSANTERKESEILKQGNAFDEVEFPLQSYMYLIKDFFVR
GYYKEQEVLYKVAKSGKINWNRTIKTQKPYVQDMDVFYLDFVTKKNSVKENELITLIHEYCVYESFERIGWLYTEMMPKK
PVIVKQERLFRSVLKDKIANTFNDKNRMLFRHMLAIIDFEGDKDSDKNYRYGTYRFEYIWEKMIDKVFGIENKADYFPKT
TWYVNGSKYDNASLEPDTVMLYGTDVYVLDAKYYKYGVTGKTWDLPESTSINKQITYGEYIANEDKFKKKHGENMKVYNA
FLMPFDSLKSKYPNNANMLKVGQAVSNWKDNTEEYHKIQGVLLDVKTLMSINVRQEMKEIEKLAKLIEN

Sequences:

>Translated_389_residues
MDTFVGLRCNDGDISINFPLGYHISEDDNELRKDIMLLLTTLSANTERKESEILKQGNAFDEVEFPLQSYMYLIKDFFVR
GYYKEQEVLYKVAKSGKINWNRTIKTQKPYVQDMDVFYLDFVTKKNSVKENELITLIHEYCVYESFERIGWLYTEMMPKK
PVIVKQERLFRSVLKDKIANTFNDKNRMLFRHMLAIIDFEGDKDSDKNYRYGTYRFEYIWEKMIDKVFGIENKADYFPKT
TWYVNGSKYDNASLEPDTVMLYGTDVYVLDAKYYKYGVTGKTWDLPESTSINKQITYGEYIANEDKFKKKHGENMKVYNA
FLMPFDSLKSKYPNNANMLKVGQAVSNWKDNTEEYHKIQGVLLDVKTLMSINVRQEMKEIEKLAKLIEN
>Mature_389_residues
MDTFVGLRCNDGDISINFPLGYHISEDDNELRKDIMLLLTTLSANTERKESEILKQGNAFDEVEFPLQSYMYLIKDFFVR
GYYKEQEVLYKVAKSGKINWNRTIKTQKPYVQDMDVFYLDFVTKKNSVKENELITLIHEYCVYESFERIGWLYTEMMPKK
PVIVKQERLFRSVLKDKIANTFNDKNRMLFRHMLAIIDFEGDKDSDKNYRYGTYRFEYIWEKMIDKVFGIENKADYFPKT
TWYVNGSKYDNASLEPDTVMLYGTDVYVLDAKYYKYGVTGKTWDLPESTSINKQITYGEYIANEDKFKKKHGENMKVYNA
FLMPFDSLKSKYPNNANMLKVGQAVSNWKDNTEEYHKIQGVLLDVKTLMSINVRQEMKEIEKLAKLIEN

Specific function: Recognizes the double-stranded sequence CTCGAG; the cleavage site is unknown [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018579 [H]

Pfam domain/function: PF09563 RE_LlaJI [H]

EC number: =3.1.21.4 [H]

Molecular weight: Translated: 46046; Mature: 46046

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTFVGLRCNDGDISINFPLGYHISEDDNELRKDIMLLLTTLSANTERKESEILKQGNAF
CCCEEEEEECCCCEEEECCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
DEVEFPLQSYMYLIKDFFVRGYYKEQEVLYKVAKSGKINWNRTIKTQKPYVQDMDVFYLD
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEECCCCCCHHCCCEEEEE
FVTKKNSVKENELITLIHEYCVYESFERIGWLYTEMMPKKPVIVKQERLFRSVLKDKIAN
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH
TFNDKNRMLFRHMLAIIDFEGDKDSDKNYRYGTYRFEYIWEKMIDKVFGIENKADYFPKT
HHCCHHHHHHHHHHHHEECCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCE
TWYVNGSKYDNASLEPDTVMLYGTDVYVLDAKYYKYGVTGKTWDLPESTSINKQITYGEY
EEEECCCCCCCCCCCCCEEEEEECEEEEECCEEEEECCCCCCCCCCCCCCCCCEEECHHH
IANEDKFKKKHGENMKVYNAFLMPFDSLKSKYPNNANMLKVGQAVSNWKDNTEEYHKIQG
HCCCHHHHHHCCCCEEEEHEECCCHHHHHHCCCCCCCEEEHHHHHHCCCCCHHHHHHHHH
VLLDVKTLMSINVRQEMKEIEKLAKLIEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDTFVGLRCNDGDISINFPLGYHISEDDNELRKDIMLLLTTLSANTERKESEILKQGNAF
CCCEEEEEECCCCEEEECCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
DEVEFPLQSYMYLIKDFFVRGYYKEQEVLYKVAKSGKINWNRTIKTQKPYVQDMDVFYLD
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEECCCCCCHHCCCEEEEE
FVTKKNSVKENELITLIHEYCVYESFERIGWLYTEMMPKKPVIVKQERLFRSVLKDKIAN
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH
TFNDKNRMLFRHMLAIIDFEGDKDSDKNYRYGTYRFEYIWEKMIDKVFGIENKADYFPKT
HHCCHHHHHHHHHHHHEECCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCE
TWYVNGSKYDNASLEPDTVMLYGTDVYVLDAKYYKYGVTGKTWDLPESTSINKQITYGEY
EEEECCCCCCCCCCCCCEEEEEECEEEEECCEEEEECCCCCCCCCCCCCCCCCEEECHHH
IANEDKFKKKHGENMKVYNAFLMPFDSLKSKYPNNANMLKVGQAVSNWKDNTEEYHKIQG
HCCCHHHHHHCCCCEEEEHEECCCHHHHHHCCCCCCCEEEHHHHHHCCCCCHHHHHHHHH
VLLDVKTLMSINVRQEMKEIEKLAKLIEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9455482; 9384377 [H]