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The map label for this gene is xylB [H]

Identifier: 238917578

GI number: 238917578

Start: 1715934

End: 1717556

Strand: Reverse

Name: xylB [H]

Synonym: EUBELI_01657

Alternate gene names: 238917578

Gene position: 1717556-1715934 (Counterclockwise)

Preceding gene: 238917579

Following gene: 238917577

Centisome position: 80.1

GC content: 40.79

Gene sequence:

>1623_bases
ATGCTTTTTAAAAACCCTGTTATTCCGGGATACAATCCCGACCCAAGCATCTGCCGCGTTGGCGATGATTTTTATCTTGT
TAATTCTACATTTGAATTCTTCCCCGGTGTACCAATATATCACAGCCGCAATCTTGTAAACTGGGAACTTACCGGATACT
GCCTTAACAGACGTTCGCAGCTTGAACTTGAAGGCTGCCGAAATTCCGGTGGTATATATGCACCTACAATAAGGCACCAC
AAAGGAATGTTTTATATGATAACAACTAATGTTACCGATAAAGGAAACTTTGTTGTCCATACAGACAATATAAACAAAGA
ATGGTCCGACCCTGCATGGATTGACCAAGGTGGTATAGACCCATCACTTTTCTGGGATGATGATGACTGCTGTTATTACT
GTTCAACCGGTAATCTTGACGGTGTAAGAGGTATTGTTGCATTTAAAATTAATCCAATGACAGGCGAAATTCTTTCCGAC
AAACACCTTATAAGCACTGGTTGCGGCGGTCAATGTGCAGAAGGTCCACATATCTACAAAAAAGACGGCTGGTATTACCT
GATGATTGCGGAAGGCGGAACAGAATATGCTCACCGCGAAACAATACAGCGTTCAAAAAATGTATTCGGTCCTTATACAC
CATGTCCACACAATCCTATTATTTCTCATAAAGAGTATAAAAAATCCGAAATTCAGGCTACGGGACATGCTGACCTTGTT
GAAGATGCAAACGGAAACTGGTGGCTTGTATTCCTCGGAATAAGACGCTTCAGCCATGCACTTCTTCACAATCTCGGTCG
TGAAACCTTTCTTGCACCTGTCACATGGAATGAAGACGGATGGCCTGTTGTCGGATACAACGGAAATGGGACTATTGAAC
TTGTAATGGATGCACCTCTTCCGGGCATGAACGAGCCGGAGACAATTGCTAATACAATAACAGACGATGCAACAGGCAGG
CCATTTTTACATGCAGACCATAGCGTCAATATTGACTTCCACCGCGATGCCATTGACAAACGCCTGCAGTTCACAAGAAA
TCCTGATATGTCTCATTATATTTATGACAGTAAAAACGGATGTCTCACGCTTAGAGGTACTGATATCACATTGAATGAAC
CAGGTAAATCCCCGACTGTTCTTTCATTTAAGCAGCCGGAATTTACAACATCACTTAAAGCTGTATTAAAAATAAAAGAC
AGTACAGCAAAACGATTTGGTGTTGCTGCCTATTATAACAACGATTATCACTATGAAATATATGTTGGCAGCGATGAAAG
CGGAAAATATGTCGGATTTTATAAACATATACACGACATGGGTGCAGAACTTGCACATATTCCTATATCTAAAGAAGATG
AAAATCTCAATCTTCTTGTAAAAATAGATACTGACCGTGAAAAATATACTTTTTCTTATGCCCTTGCTGATACAACGAAT
CTTGATGCAAAAATTGCCTGCCATGAAATCGGTTCAGGACTTAATGCCGGACTCAGCACGGAGGGTACACGTACAATGAC
TTTTACAGGAACATTATTTTCACTTTTTGCCGAAAACGGTAACGGTACATTTGAAACCGGTGTTGCACTCACCATAAACC
CTGATGTTGATTACAAACTGTAA

Upstream 100 bases:

>100_bases
TTAATAAATATATTCTATAGATAAATTATTAAATGAATTTTATATAACTGCACTTTAATTTTTATTTTATATGCAATATT
TTTTCTGAGGTGATAAGATT

Downstream 100 bases:

>100_bases
TCCGCTAAACATATTGAATTACTTCCGCCGCAGACATTAAATGTGTCTGCGGTGTCTTATCCTGCCTAAAAAATTGGTCT
TTTATTCATCCGTTTCAATG

Product: glycoside hydrolase family 43 protein

Products: NA

Alternate protein names: Beta-xylosidase; 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase; Alpha-N-arabinofuranosidase; Arabinosidase [H]

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MLFKNPVIPGYNPDPSICRVGDDFYLVNSTFEFFPGVPIYHSRNLVNWELTGYCLNRRSQLELEGCRNSGGIYAPTIRHH
KGMFYMITTNVTDKGNFVVHTDNINKEWSDPAWIDQGGIDPSLFWDDDDCCYYCSTGNLDGVRGIVAFKINPMTGEILSD
KHLISTGCGGQCAEGPHIYKKDGWYYLMIAEGGTEYAHRETIQRSKNVFGPYTPCPHNPIISHKEYKKSEIQATGHADLV
EDANGNWWLVFLGIRRFSHALLHNLGRETFLAPVTWNEDGWPVVGYNGNGTIELVMDAPLPGMNEPETIANTITDDATGR
PFLHADHSVNIDFHRDAIDKRLQFTRNPDMSHYIYDSKNGCLTLRGTDITLNEPGKSPTVLSFKQPEFTTSLKAVLKIKD
STAKRFGVAAYYNNDYHYEIYVGSDESGKYVGFYKHIHDMGAELAHIPISKEDENLNLLVKIDTDREKYTFSYALADTTN
LDAKIACHEIGSGLNAGLSTEGTRTMTFTGTLFSLFAENGNGTFETGVALTINPDVDYKL

Sequences:

>Translated_540_residues
MLFKNPVIPGYNPDPSICRVGDDFYLVNSTFEFFPGVPIYHSRNLVNWELTGYCLNRRSQLELEGCRNSGGIYAPTIRHH
KGMFYMITTNVTDKGNFVVHTDNINKEWSDPAWIDQGGIDPSLFWDDDDCCYYCSTGNLDGVRGIVAFKINPMTGEILSD
KHLISTGCGGQCAEGPHIYKKDGWYYLMIAEGGTEYAHRETIQRSKNVFGPYTPCPHNPIISHKEYKKSEIQATGHADLV
EDANGNWWLVFLGIRRFSHALLHNLGRETFLAPVTWNEDGWPVVGYNGNGTIELVMDAPLPGMNEPETIANTITDDATGR
PFLHADHSVNIDFHRDAIDKRLQFTRNPDMSHYIYDSKNGCLTLRGTDITLNEPGKSPTVLSFKQPEFTTSLKAVLKIKD
STAKRFGVAAYYNNDYHYEIYVGSDESGKYVGFYKHIHDMGAELAHIPISKEDENLNLLVKIDTDREKYTFSYALADTTN
LDAKIACHEIGSGLNAGLSTEGTRTMTFTGTLFSLFAENGNGTFETGVALTINPDVDYKL
>Mature_540_residues
MLFKNPVIPGYNPDPSICRVGDDFYLVNSTFEFFPGVPIYHSRNLVNWELTGYCLNRRSQLELEGCRNSGGIYAPTIRHH
KGMFYMITTNVTDKGNFVVHTDNINKEWSDPAWIDQGGIDPSLFWDDDDCCYYCSTGNLDGVRGIVAFKINPMTGEILSD
KHLISTGCGGQCAEGPHIYKKDGWYYLMIAEGGTEYAHRETIQRSKNVFGPYTPCPHNPIISHKEYKKSEIQATGHADLV
EDANGNWWLVFLGIRRFSHALLHNLGRETFLAPVTWNEDGWPVVGYNGNGTIELVMDAPLPGMNEPETIANTITDDATGR
PFLHADHSVNIDFHRDAIDKRLQFTRNPDMSHYIYDSKNGCLTLRGTDITLNEPGKSPTVLSFKQPEFTTSLKAVLKIKD
STAKRFGVAAYYNNDYHYEIYVGSDESGKYVGFYKHIHDMGAELAHIPISKEDENLNLLVKIDTDREKYTFSYALADTTN
LDAKIACHEIGSGLNAGLSTEGTRTMTFTGTLFSLFAENGNGTFETGVALTINPDVDYKL

Specific function: Has a 1.6-fold higher activity as an arabinosidase than as a beta-xylosidase when tested on the substrates nitrophenyl- beta-D-xylopyranoside and P-nitrophenyl-alpha-L-arabinofuranoside [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=503, Percent_Identity=32.20675944334, Blast_Score=230, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37; =3.2.1.55 [H]

Molecular weight: Translated: 60511; Mature: 60511

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFKNPVIPGYNPDPSICRVGDDFYLVNSTFEFFPGVPIYHSRNLVNWELTGYCLNRRSQ
CCCCCCCCCCCCCCCCEEEECCCEEEEECCHHHCCCCCEEECCCEEEEEEEEEEECCCCE
LELEGCRNSGGIYAPTIRHHKGMFYMITTNVTDKGNFVVHTDNINKEWSDPAWIDQGGID
EEEECCCCCCCEEECEEECCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCEEECCCCC
PSLFWDDDDCCYYCSTGNLDGVRGIVAFKINPMTGEILSDKHLISTGCGGQCAEGPHIYK
CCEEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCEEEE
KDGWYYLMIAEGGTEYAHRETIQRSKNVFGPYTPCPHNPIISHKEYKKSEIQATGHADLV
ECCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCHHHEEECCCCCEE
EDANGNWWLVFLGIRRFSHALLHNLGRETFLAPVTWNEDGWPVVGYNGNGTIELVMDAPL
ECCCCCEEEEEEEHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCC
PGMNEPETIANTITDDATGRPFLHADHSVNIDFHRDAIDKRLQFTRNPDMSHYIYDSKNG
CCCCCCHHHHHHHCCCCCCCCEEECCCEEEEEECHHHHHHHHEECCCCCCCEEEEECCCC
CLTLRGTDITLNEPGKSPTVLSFKQPEFTTSLKAVLKIKDSTAKRFGVAAYYNNDYHYEI
EEEEECCEEEECCCCCCCEEEEECCCCHHHCEEEEEEECCCCCCCEEEEEEECCCEEEEE
YVGSDESGKYVGFYKHIHDMGAELAHIPISKEDENLNLLVKIDTDREKYTFSYALADTTN
EECCCCCCCEEEHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCC
LDAKIACHEIGSGLNAGLSTEGTRTMTFTGTLFSLFAENGNGTFETGVALTINPDVDYKL
CCEEEEEEHHCCCCCCCCCCCCCEEEEEECEEEEEEECCCCCEEECCEEEEECCCCCCCC
>Mature Secondary Structure
MLFKNPVIPGYNPDPSICRVGDDFYLVNSTFEFFPGVPIYHSRNLVNWELTGYCLNRRSQ
CCCCCCCCCCCCCCCCEEEECCCEEEEECCHHHCCCCCEEECCCEEEEEEEEEEECCCCE
LELEGCRNSGGIYAPTIRHHKGMFYMITTNVTDKGNFVVHTDNINKEWSDPAWIDQGGID
EEEECCCCCCCEEECEEECCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCEEECCCCC
PSLFWDDDDCCYYCSTGNLDGVRGIVAFKINPMTGEILSDKHLISTGCGGQCAEGPHIYK
CCEEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCEEEE
KDGWYYLMIAEGGTEYAHRETIQRSKNVFGPYTPCPHNPIISHKEYKKSEIQATGHADLV
ECCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCHHHEEECCCCCEE
EDANGNWWLVFLGIRRFSHALLHNLGRETFLAPVTWNEDGWPVVGYNGNGTIELVMDAPL
ECCCCCEEEEEEEHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCC
PGMNEPETIANTITDDATGRPFLHADHSVNIDFHRDAIDKRLQFTRNPDMSHYIYDSKNG
CCCCCCHHHHHHHCCCCCCCCEEECCCEEEEEECHHHHHHHHEECCCCCCCEEEEECCCC
CLTLRGTDITLNEPGKSPTVLSFKQPEFTTSLKAVLKIKDSTAKRFGVAAYYNNDYHYEI
EEEEECCEEEECCCCCCCEEEEECCCCHHHCEEEEEEECCCCCCCEEEEEEECCCEEEEE
YVGSDESGKYVGFYKHIHDMGAELAHIPISKEDENLNLLVKIDTDREKYTFSYALADTTN
EECCCCCCCEEEHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCC
LDAKIACHEIGSGLNAGLSTEGTRTMTFTGTLFSLFAENGNGTFETGVALTINPDVDYKL
CCEEEEEEHHCCCCCCCCCCCCCEEEEEECEEEEEEECCCCCEEECCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1905520 [H]