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The map label for this gene is lrpA [H]

Identifier: 238917158

GI number: 238917158

Start: 1248350

End: 1248805

Strand: Reverse

Name: lrpA [H]

Synonym: EUBELI_01230

Alternate gene names: 238917158

Gene position: 1248805-1248350 (Counterclockwise)

Preceding gene: 238917159

Following gene: 238917157

Centisome position: 58.24

GC content: 35.96

Gene sequence:

>456_bases
ATGGATAAAATCGATAAGAAGATAATTACATTATTACAGCAGAATGCAAGGATGCCTTTAAAGGCTCTTGCCGAAAATGT
TTTCCTTTCATCACCTGCGGTTTCAGCAAGAATTGAAAGGCTTGAGAAGGAAGAAATTATTGAAGGTTATGAAGTTAAGA
TTAATCAGTTAAAGCTGGGATATCATATTACTGCGTTTATTAATCTTGAAGTTGCTCCTGTACAGAAACCGGATTTCTAT
CCATTTATCAAATCATGCCCTAATGTTGTTGAATGCAACTGTGTAACAGGTAATTATTCAATGCTATTAAAGGTTATGTT
CCCAAGTACCATGGAACTTGATACATTTATCGGCCAGCTTCAGAAGTTCGGAAGAACAAGTACACAGATTGTGTTCTCAA
CACCTGTTGCTCCAAGAGGTATTGATGTTAATCAGGAGATGCCTACAGATAATTAA

Upstream 100 bases:

>100_bases
GTCAAAGGGGACGATTTTAGCAGCAACGCTAGGATTGTCTCCTTTTTTGGTTAAATTAATAGCATTAAACAATGAATATT
ATAATCTGGAGGTTAACACC

Downstream 100 bases:

>100_bases
ATTCATCAAAAGTTCATAATTATTTAACCTATTAACACTGTCAGACACTTGCTGTTCTGGCAGTGTTTTTGTTATAATTA
TCTGAGTTTAAATTTCGTGT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MDKIDKKIITLLQQNARMPLKALAENVFLSSPAVSARIERLEKEEIIEGYEVKINQLKLGYHITAFINLEVAPVQKPDFY
PFIKSCPNVVECNCVTGNYSMLLKVMFPSTMELDTFIGQLQKFGRTSTQIVFSTPVAPRGIDVNQEMPTDN

Sequences:

>Translated_151_residues
MDKIDKKIITLLQQNARMPLKALAENVFLSSPAVSARIERLEKEEIIEGYEVKINQLKLGYHITAFINLEVAPVQKPDFY
PFIKSCPNVVECNCVTGNYSMLLKVMFPSTMELDTFIGQLQKFGRTSTQIVFSTPVAPRGIDVNQEMPTDN
>Mature_151_residues
MDKIDKKIITLLQQNARMPLKALAENVFLSSPAVSARIERLEKEEIIEGYEVKINQLKLGYHITAFINLEVAPVQKPDFY
PFIKSCPNVVECNCVTGNYSMLLKVMFPSTMELDTFIGQLQKFGRTSTQIVFSTPVAPRGIDVNQEMPTDN

Specific function: Negative regulation of glyA transcription and kinB- dependent sporulation [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=141, Percent_Identity=28.3687943262411, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17056; Mature: 17056

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIDKKIITLLQQNARMPLKALAENVFLSSPAVSARIERLEKEEIIEGYEVKINQLKLG
CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEC
YHITAFINLEVAPVQKPDFYPFIKSCPNVVECNCVTGNYSMLLKVMFPSTMELDTFIGQL
EEEEEEEEEEEECCCCCCCCHHHHCCCCEEEEEEEECCHHHEEEECCCCCCHHHHHHHHH
QKFGRTSTQIVFSTPVAPRGIDVNQEMPTDN
HHHCCCCCEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDKIDKKIITLLQQNARMPLKALAENVFLSSPAVSARIERLEKEEIIEGYEVKINQLKLG
CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEC
YHITAFINLEVAPVQKPDFYPFIKSCPNVVECNCVTGNYSMLLKVMFPSTMELDTFIGQL
EEEEEEEEEEEECCCCCCCCHHHHCCCCEEEEEEEECCHHHEEEECCCCCCHHHHHHHHH
QKFGRTSTQIVFSTPVAPRGIDVNQEMPTDN
HHHCCCCCEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11902725; 9384377 [H]