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The map label for this gene is yjcD [H]

Identifier: 238917159

GI number: 238917159

Start: 1249311

End: 1251176

Strand: Reverse

Name: yjcD [H]

Synonym: EUBELI_01231

Alternate gene names: 238917159

Gene position: 1251176-1249311 (Counterclockwise)

Preceding gene: 238917160

Following gene: 238917158

Centisome position: 58.35

GC content: 38.8

Gene sequence:

>1866_bases
GTGCCGCTTTTGCAGTTTAATGAAGCACAGATACAGGCTATACAACATAATAAAGGACCGTGTATGGTAATTGCCGGACC
GGGGTCGGGAAAGACAACTGTTCTTACTCACAGGGTAAGATATCTTATTGACAGGTGTGGGGTCAATCCATCTGATATTC
TTGTTATTACATTTACTAAGGCTGCTGCCGAACAGATGAAGCTTAAGTTTAAGGGGTTGTCAGAGGGCAGAAACTCTGCA
GTAACATTTGGTACATTTCATGCAGTATTTTTTACAATACTTAAGGCTGCATATAATTATTCTGCACGCTGCATTATTAA
GCCACAGGTACAGCATGAATTCGTGAAAGACCAGATGTGCAGACTTGAACTGGAGTATGATGATGAGAAGGAAGCTGTAG
CAAGTGTTTTATCTGAGATAAGCCGTGTTAAGGGTGAAGCTGTTAATATAGATGAATATGAGAGCATGTCTGTTCCACAA
CAGAGTTTCAGAATAATATACATGGCTTATGATGATATGCTTGTAAAAAAGCATCTGATTGATTTTGATGACATGATAGG
ACTATGTCGTGACCTACTGATGCAGAGGGAAGATTACAGGAAGGCGTGGCAGAATAAGTATAAGTACATTTTGGTTGACG
AGTTTCAGGATATCAATAAGGCTCAGTTTGATGTTGTGAGGATTCTTGCTGACGGATACAGGAATCTTTTCGTGGTGGGG
GATGATGACCAGAGTATATATGGATTCAGAGGTTCTGCTCCACAGATAATGTTAGATTTCAATAAGTATTATAGTGATGC
AGTAAGAATTGACATGTGTATTAATTACAGGTCAACGGGCAATATTGTGCTTGCTTCAAGGGCTGTAGCAGAGGAAAATG
AGCAACGTTATTATAAAGATATAACGACCTACAATTCACAAGGAGATTCTGTGTTTATATATGAATTTAACAGCCTGAAT
GATGAGAAAGCATTTGTTACATCTGAGATAAGAAGACTTATTGACAGCGGAATAGCTGCTGATGACATTGCTGTGTTATC
AAGAACTAATGTGATTGGGAATATGTATATGTCAAGGCTTGAAAGTGACGGGATTCCATGCTGTGATTATTCGGCAGTAC
AGGATGTATATGAGCACTGGATAAGTAAGGATATTCTGACATATATAAGGATTGCACTTGGAAGCAGGGAAAGAATGGAC
TTTCTGCGTATTATTAATAAACCAATCCGATATATAACCCGTTCATATATTACACAGCCGGCAGATATTAATGCATTGAA
GAGAAGCTGTGAAAGAAATGAACAGATGAGTGAACAGGTGGAAAAGCTGGCATCTGATATTAACATGATAAGAAATATGT
CTCCATTTGCGGCAGTTAATTATATAAGAAAGGGTATTGGCTACGATGAATATATAAGAAATTATATATATGAACATAAG
GCTGATAAGGAAGAATTATATAATGTGCTTGATGAACTGGCACACAGGGCGTCGCGGTATATGAGCCTCTCACAATGGCT
TGATGGTATTACAGAATACCTTAAGCAGTGTGATACTCAGCGTAGGAACAACACGGTGGAAGGTGTGCATATGCTTACAA
TGCATGGCTCTAAAGGGCTTGAATATAAGATCGTGATGGTGATGGATGTATGTGAGGGGATAATACCGTATAATAAGGCA
GTTCTTGATGAGCAGATAGAAGAGGAAAGAAGACTTTTTTATGTTGCAATGACAAGGGCAAAAGAAAAGTTGTATCTTCT
GTCCCCCAAGCAGAGGTACAATAAAGATACAACCCGTTCACGCTTTTTAGAAGAGATTCTTACTGCTCGTTATCCTCTTC
TTCGTACAGATCTTCATACTCCATAG

Upstream 100 bases:

>100_bases
TTATTAATAAAATATAAAATATATATTATTGAATTGACATAATAGCGACATACTTATATAATCTTAGTATACATTTGTTT
GTGTAAGATTATTATAAGGG

Downstream 100 bases:

>100_bases
CATCTAATTCTTCATCGAATGCTTCAGATACAAGCTCGTATTCATCATCAGATTCAATATTCTCAAGTACAGGTTCGTTG
TCACCTTCAACCTTGTATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 621; Mature: 620

Protein sequence:

>621_residues
MPLLQFNEAQIQAIQHNKGPCMVIAGPGSGKTTVLTHRVRYLIDRCGVNPSDILVITFTKAAAEQMKLKFKGLSEGRNSA
VTFGTFHAVFFTILKAAYNYSARCIIKPQVQHEFVKDQMCRLELEYDDEKEAVASVLSEISRVKGEAVNIDEYESMSVPQ
QSFRIIYMAYDDMLVKKHLIDFDDMIGLCRDLLMQREDYRKAWQNKYKYILVDEFQDINKAQFDVVRILADGYRNLFVVG
DDDQSIYGFRGSAPQIMLDFNKYYSDAVRIDMCINYRSTGNIVLASRAVAEENEQRYYKDITTYNSQGDSVFIYEFNSLN
DEKAFVTSEIRRLIDSGIAADDIAVLSRTNVIGNMYMSRLESDGIPCCDYSAVQDVYEHWISKDILTYIRIALGSRERMD
FLRIINKPIRYITRSYITQPADINALKRSCERNEQMSEQVEKLASDINMIRNMSPFAAVNYIRKGIGYDEYIRNYIYEHK
ADKEELYNVLDELAHRASRYMSLSQWLDGITEYLKQCDTQRRNNTVEGVHMLTMHGSKGLEYKIVMVMDVCEGIIPYNKA
VLDEQIEEERRLFYVAMTRAKEKLYLLSPKQRYNKDTTRSRFLEEILTARYPLLRTDLHTP

Sequences:

>Translated_621_residues
MPLLQFNEAQIQAIQHNKGPCMVIAGPGSGKTTVLTHRVRYLIDRCGVNPSDILVITFTKAAAEQMKLKFKGLSEGRNSA
VTFGTFHAVFFTILKAAYNYSARCIIKPQVQHEFVKDQMCRLELEYDDEKEAVASVLSEISRVKGEAVNIDEYESMSVPQ
QSFRIIYMAYDDMLVKKHLIDFDDMIGLCRDLLMQREDYRKAWQNKYKYILVDEFQDINKAQFDVVRILADGYRNLFVVG
DDDQSIYGFRGSAPQIMLDFNKYYSDAVRIDMCINYRSTGNIVLASRAVAEENEQRYYKDITTYNSQGDSVFIYEFNSLN
DEKAFVTSEIRRLIDSGIAADDIAVLSRTNVIGNMYMSRLESDGIPCCDYSAVQDVYEHWISKDILTYIRIALGSRERMD
FLRIINKPIRYITRSYITQPADINALKRSCERNEQMSEQVEKLASDINMIRNMSPFAAVNYIRKGIGYDEYIRNYIYEHK
ADKEELYNVLDELAHRASRYMSLSQWLDGITEYLKQCDTQRRNNTVEGVHMLTMHGSKGLEYKIVMVMDVCEGIIPYNKA
VLDEQIEEERRLFYVAMTRAKEKLYLLSPKQRYNKDTTRSRFLEEILTARYPLLRTDLHTP
>Mature_620_residues
PLLQFNEAQIQAIQHNKGPCMVIAGPGSGKTTVLTHRVRYLIDRCGVNPSDILVITFTKAAAEQMKLKFKGLSEGRNSAV
TFGTFHAVFFTILKAAYNYSARCIIKPQVQHEFVKDQMCRLELEYDDEKEAVASVLSEISRVKGEAVNIDEYESMSVPQQ
SFRIIYMAYDDMLVKKHLIDFDDMIGLCRDLLMQREDYRKAWQNKYKYILVDEFQDINKAQFDVVRILADGYRNLFVVGD
DDQSIYGFRGSAPQIMLDFNKYYSDAVRIDMCINYRSTGNIVLASRAVAEENEQRYYKDITTYNSQGDSVFIYEFNSLND
EKAFVTSEIRRLIDSGIAADDIAVLSRTNVIGNMYMSRLESDGIPCCDYSAVQDVYEHWISKDILTYIRIALGSRERMDF
LRIINKPIRYITRSYITQPADINALKRSCERNEQMSEQVEKLASDINMIRNMSPFAAVNYIRKGIGYDEYIRNYIYEHKA
DKEELYNVLDELAHRASRYMSLSQWLDGITEYLKQCDTQRRNNTVEGVHMLTMHGSKGLEYKIVMVMDVCEGIIPYNKAV
LDEQIEEERRLFYVAMTRAKEKLYLLSPKQRYNKDTTRSRFLEEILTARYPLLRTDLHTP

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI48994965, Length=641, Percent_Identity=29.0171606864275, Blast_Score=233, Evalue=3e-62,
Organism=Escherichia coli, GI2367296, Length=642, Percent_Identity=28.0373831775701, Blast_Score=218, Evalue=7e-58,
Organism=Saccharomyces cerevisiae, GI6322369, Length=313, Percent_Identity=31.629392971246, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6324477, Length=482, Percent_Identity=24.2738589211618, Blast_Score=81, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 72112; Mature: 71981

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLLQFNEAQIQAIQHNKGPCMVIAGPGSGKTTVLTHRVRYLIDRCGVNPSDILVITFTK
CCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECH
AAAEQMKLKFKGLSEGRNSAVTFGTFHAVFFTILKAAYNYSARCIIKPQVQHEFVKDQMC
HHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
RLELEYDDEKEAVASVLSEISRVKGEAVNIDEYESMSVPQQSFRIIYMAYDDMLVKKHLI
EEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCEEEEEEHHHHHHHHHHC
DFDDMIGLCRDLLMQREDYRKAWQNKYKYILVDEFQDINKAQFDVVRILADGYRNLFVVG
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE
DDDQSIYGFRGSAPQIMLDFNKYYSDAVRIDMCINYRSTGNIVLASRAVAEENEQRYYKD
CCCCCEECCCCCCCEEEEEHHHHHCCCEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHH
ITTYNSQGDSVFIYEFNSLNDEKAFVTSEIRRLIDSGIAADDIAVLSRTNVIGNMYMSRL
HHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
ESDGIPCCDYSAVQDVYEHWISKDILTYIRIALGSRERMDFLRIINKPIRYITRSYITQP
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
ADINALKRSCERNEQMSEQVEKLASDINMIRNMSPFAAVNYIRKGIGYDEYIRNYIYEHK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCC
ADKEELYNVLDELAHRASRYMSLSQWLDGITEYLKQCDTQRRNNTVEGVHMLTMHGSKGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
EYKIVMVMDVCEGIIPYNKAVLDEQIEEERRLFYVAMTRAKEKLYLLSPKQRYNKDTTRS
CEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHEEHHEEHHCCCEEEEECCHHHCCCCHHHH
RFLEEILTARYPLLRTDLHTP
HHHHHHHHHCCCHHHCCCCCC
>Mature Secondary Structure 
PLLQFNEAQIQAIQHNKGPCMVIAGPGSGKTTVLTHRVRYLIDRCGVNPSDILVITFTK
CCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECH
AAAEQMKLKFKGLSEGRNSAVTFGTFHAVFFTILKAAYNYSARCIIKPQVQHEFVKDQMC
HHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
RLELEYDDEKEAVASVLSEISRVKGEAVNIDEYESMSVPQQSFRIIYMAYDDMLVKKHLI
EEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCEEEEEEHHHHHHHHHHC
DFDDMIGLCRDLLMQREDYRKAWQNKYKYILVDEFQDINKAQFDVVRILADGYRNLFVVG
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE
DDDQSIYGFRGSAPQIMLDFNKYYSDAVRIDMCINYRSTGNIVLASRAVAEENEQRYYKD
CCCCCEECCCCCCCEEEEEHHHHHCCCEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHH
ITTYNSQGDSVFIYEFNSLNDEKAFVTSEIRRLIDSGIAADDIAVLSRTNVIGNMYMSRL
HHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
ESDGIPCCDYSAVQDVYEHWISKDILTYIRIALGSRERMDFLRIINKPIRYITRSYITQP
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
ADINALKRSCERNEQMSEQVEKLASDINMIRNMSPFAAVNYIRKGIGYDEYIRNYIYEHK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCC
ADKEELYNVLDELAHRASRYMSLSQWLDGITEYLKQCDTQRRNNTVEGVHMLTMHGSKGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
EYKIVMVMDVCEGIIPYNKAVLDEQIEEERRLFYVAMTRAKEKLYLLSPKQRYNKDTTRS
CEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHEEHHEEHHCCCEEEEECCHHHCCCCHHHH
RFLEEILTARYPLLRTDLHTP
HHHHHHHHHCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]