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The map label for this gene is rpoD [C]

Identifier: 238917100

GI number: 238917100

Start: 1183886

End: 1184824

Strand: Reverse

Name: rpoD [C]

Synonym: EUBELI_01170

Alternate gene names: 238917100

Gene position: 1184824-1183886 (Counterclockwise)

Preceding gene: 238917102

Following gene: 238917099

Centisome position: 55.26

GC content: 37.27

Gene sequence:

>939_bases
ATGGCTGAAAATAAAGATTCCCAGGCAGCATTTATGGAGGCTGTCGGAAGCATTAAAGAATATGCCAAGGTTAATGGCAA
TATTGTTACAAGAGAGGATGTACACAGCTTTTTTAAAGATATGGCATTAGATGATGCCAAATTCCAGATGATTTCAGGAT
ATCTGATGGCTAATGGAATTAAGATACAGGGTGAAGACAGCGTAGATAATGAATTCCTAAAGCTGATGGAAAGTGCCTCA
GATGATAATATTGATGAGTCAGGACAACATATTTCTAAGGAAGAGCAGGAAGATAAGAAGGTTGCGGATGATATTGTAAG
TCATCTTGATTACGAAGAGGATGAGAAGTATCTGAAAATATATCTTCAGGATATATCAGGAATACAGCCTATGACAGATG
TTACAAGGTCATATCTTCTTATGAACATAGTTGAGGACAATGATAAAGAATCACTAAAACTGTTTACAGAAAGTTATCTT
GAAAAGATTGCGTCATGGATAGAACCATTCAGAGGAAAGGGAGTTCTTGCATGTGACCTTGTACAGGAGGCCAATCTGGC
TATGACAGCATATATAGGACAGCAGGAATGGCTTAATAATTATGAGTGGAAGGATAAGATTAAAGAAGGTGGACAGGAAG
ACCTTCTTAATGTGCTTAAAGGAATTGACGAAGCAGTTAAGGAGCTTATTGAAGGCAGTCTTAATATGCTTATAGATGAA
CAGACGGATGTTAATATGGTTTCGGGAAAAATTCTCAATAAAGTCAATCTTGTAAATGACTGGGGAACAAGACTTAAAGA
AGAATTAGGAAGAAAACCTACGGTGGAAGAAGTAGCCAAGAACATGGGAGTTGCAGAAAATGTGGTACTTGAGGCTATCA
GGCTTTCAAGTGAAACAATTGAAGATATCAAGTACGAAAAGACGGTTCCTAAAGAATAA

Upstream 100 bases:

>100_bases
TGCTTTTGTCAAATGTGTATACTGAAATAATACATTTACCAAATGCGTACTTATGTGTTATATTATACAGAACGAATTAA
GTTGAAAGAGGTTAGATAAT

Downstream 100 bases:

>100_bases
CTGATTAATAAAATTAATATATACACGATTTCGAGAAAAATTTAACAATTTTTTATTGATTTTAATTAGGGCATGGTATA
GAATTAAAAAGAATTTTGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MAENKDSQAAFMEAVGSIKEYAKVNGNIVTREDVHSFFKDMALDDAKFQMISGYLMANGIKIQGEDSVDNEFLKLMESAS
DDNIDESGQHISKEEQEDKKVADDIVSHLDYEEDEKYLKIYLQDISGIQPMTDVTRSYLLMNIVEDNDKESLKLFTESYL
EKIASWIEPFRGKGVLACDLVQEANLAMTAYIGQQEWLNNYEWKDKIKEGGQEDLLNVLKGIDEAVKELIEGSLNMLIDE
QTDVNMVSGKILNKVNLVNDWGTRLKEELGRKPTVEEVAKNMGVAENVVLEAIRLSSETIEDIKYEKTVPKE

Sequences:

>Translated_312_residues
MAENKDSQAAFMEAVGSIKEYAKVNGNIVTREDVHSFFKDMALDDAKFQMISGYLMANGIKIQGEDSVDNEFLKLMESAS
DDNIDESGQHISKEEQEDKKVADDIVSHLDYEEDEKYLKIYLQDISGIQPMTDVTRSYLLMNIVEDNDKESLKLFTESYL
EKIASWIEPFRGKGVLACDLVQEANLAMTAYIGQQEWLNNYEWKDKIKEGGQEDLLNVLKGIDEAVKELIEGSLNMLIDE
QTDVNMVSGKILNKVNLVNDWGTRLKEELGRKPTVEEVAKNMGVAENVVLEAIRLSSETIEDIKYEKTVPKE
>Mature_311_residues
AENKDSQAAFMEAVGSIKEYAKVNGNIVTREDVHSFFKDMALDDAKFQMISGYLMANGIKIQGEDSVDNEFLKLMESASD
DNIDESGQHISKEEQEDKKVADDIVSHLDYEEDEKYLKIYLQDISGIQPMTDVTRSYLLMNIVEDNDKESLKLFTESYLE
KIASWIEPFRGKGVLACDLVQEANLAMTAYIGQQEWLNNYEWKDKIKEGGQEDLLNVLKGIDEAVKELIEGSLNMLIDEQ
TDVNMVSGKILNKVNLVNDWGTRLKEELGRKPTVEEVAKNMGVAENVVLEAIRLSSETIEDIKYEKTVPKE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Is The Primary Sigma Factor Of This Bacterium. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 700 (log & stationary phase) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35370; Mature: 35239

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENKDSQAAFMEAVGSIKEYAKVNGNIVTREDVHSFFKDMALDDAKFQMISGYLMANGI
CCCCCCHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCHHHHHHHHHHHHHCCE
KIQGEDSVDNEFLKLMESASDDNIDESGQHISKEEQEDKKVADDIVSHLDYEEDEKYLKI
EEECCCCHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
YLQDISGIQPMTDVTRSYLLMNIVEDNDKESLKLFTESYLEKIASWIEPFRGKGVLACDL
HHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHH
VQEANLAMTAYIGQQEWLNNYEWKDKIKEGGQEDLLNVLKGIDEAVKELIEGSLNMLIDE
HHHCCHHHHHHHCHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QTDVNMVSGKILNKVNLVNDWGTRLKEELGRKPTVEEVAKNMGVAENVVLEAIRLSSETI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
EDIKYEKTVPKE
HHHHHCCCCCCC
>Mature Secondary Structure 
AENKDSQAAFMEAVGSIKEYAKVNGNIVTREDVHSFFKDMALDDAKFQMISGYLMANGI
CCCCCHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCHHHHHHHHHHHHHCCE
KIQGEDSVDNEFLKLMESASDDNIDESGQHISKEEQEDKKVADDIVSHLDYEEDEKYLKI
EEECCCCHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
YLQDISGIQPMTDVTRSYLLMNIVEDNDKESLKLFTESYLEKIASWIEPFRGKGVLACDL
HHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHH
VQEANLAMTAYIGQQEWLNNYEWKDKIKEGGQEDLLNVLKGIDEAVKELIEGSLNMLIDE
HHHCCHHHHHHHCHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QTDVNMVSGKILNKVNLVNDWGTRLKEELGRKPTVEEVAKNMGVAENVVLEAIRLSSETI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
EDIKYEKTVPKE
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA