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The map label for this gene is yqxC [H]

Identifier: 238917013

GI number: 238917013

Start: 1096688

End: 1097491

Strand: Reverse

Name: yqxC [H]

Synonym: EUBELI_01083

Alternate gene names: 238917013

Gene position: 1097491-1096688 (Counterclockwise)

Preceding gene: 238917014

Following gene: 238917012

Centisome position: 51.18

GC content: 39.05

Gene sequence:

>804_bases
ATGAGTAAAGAAAGATTAGATGTTTTATTAGTTAATAAAGGGCTTGCGACTTCAAGAGAGAAGGCAAAAGCTATTATTAT
GTCTGGCAATGTATATGTTGACGGACAGAAGGAAGACAAGGCAGGTCAGTCATTTCCTGACACTGCAGTGATAGAGGTCC
GCGGAACAACTCTTAAGTATGTTAGCCGTGGTGGTCTTAAGCTTGAGAAAGCTATGCAGAATTTTGATGTGACGCTTGAA
GGCAAGATATGTATGGATGTAGGTTCATCAACGGGTGGATTCACTGATTGCATGCTTCAGAACGGTGCAATTAAAGTCTA
TGCTGTCGATGTAGGACATGGACAGCTTGACTGGAAGTTGCGCAATGATGAGAGAGTTGTATGCATGGAAAAAACTAATA
TCCGTTATGTAACCCCTGATGATGTTGCGGACAGAATACAGTTTTCAAGTATAGATGTATCATTTATCTCACTTACTAAG
GTACTTACTCCAGTAAGAAATCTTCTTACAGATGATGGCCAGATAGTGTGTCTTATCAAGCCACAGTTTGAGGCAGGACG
TGAGAAGGTAGGAAAGCATGGCGTTGTAAGAGATAAAGATGTGCATATAGAAGTAATCAATAAGGTTATTGATTATGCAA
TGTCAATAGGATTTGAAATCCTTAATCTTGAGTTCAGTCCTGTTAAGGGACCTGAGGGGAATATTGAGTATCTGTTGCAT
TTGCAGAAAATTGCAGAACCACAGATAAAGGAAATTCCATTTGTTGTAGAAAATGTAGTTGAAAAAGCTCACGAAGTATT
GTAA

Upstream 100 bases:

>100_bases
AATGTTGATATTCTGCGACGGGAATCAGGTGTTGACAGAGACAGTATTATTGCGAAGGTGCTTAACAGATGGGCAAATGT
ATTGAATAAGGACAAGAGAA

Downstream 100 bases:

>100_bases
TATATATTTAATTCTTTTCGTATACTAAATGAGGTTCAGCATGAAATATTTTTATATTGTTACTAACAGGTTTAAAGATC
CAGATGGTGTTAATACAAGA

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSKERLDVLLVNKGLATSREKAKAIIMSGNVYVDGQKEDKAGQSFPDTAVIEVRGTTLKYVSRGGLKLEKAMQNFDVTLE
GKICMDVGSSTGGFTDCMLQNGAIKVYAVDVGHGQLDWKLRNDERVVCMEKTNIRYVTPDDVADRIQFSSIDVSFISLTK
VLTPVRNLLTDDGQIVCLIKPQFEAGREKVGKHGVVRDKDVHIEVINKVIDYAMSIGFEILNLEFSPVKGPEGNIEYLLH
LQKIAEPQIKEIPFVVENVVEKAHEVL

Sequences:

>Translated_267_residues
MSKERLDVLLVNKGLATSREKAKAIIMSGNVYVDGQKEDKAGQSFPDTAVIEVRGTTLKYVSRGGLKLEKAMQNFDVTLE
GKICMDVGSSTGGFTDCMLQNGAIKVYAVDVGHGQLDWKLRNDERVVCMEKTNIRYVTPDDVADRIQFSSIDVSFISLTK
VLTPVRNLLTDDGQIVCLIKPQFEAGREKVGKHGVVRDKDVHIEVINKVIDYAMSIGFEILNLEFSPVKGPEGNIEYLLH
LQKIAEPQIKEIPFVVENVVEKAHEVL
>Mature_266_residues
SKERLDVLLVNKGLATSREKAKAIIMSGNVYVDGQKEDKAGQSFPDTAVIEVRGTTLKYVSRGGLKLEKAMQNFDVTLEG
KICMDVGSSTGGFTDCMLQNGAIKVYAVDVGHGQLDWKLRNDERVVCMEKTNIRYVTPDDVADRIQFSSIDVSFISLTKV
LTPVRNLLTDDGQIVCLIKPQFEAGREKVGKHGVVRDKDVHIEVINKVIDYAMSIGFEILNLEFSPVKGPEGNIEYLLHL
QKIAEPQIKEIPFVVENVVEKAHEVL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29666; Mature: 29534

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKERLDVLLVNKGLATSREKAKAIIMSGNVYVDGQKEDKAGQSFPDTAVIEVRGTTLKY
CCCCCEEEEEEECCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCEEEEEEECCEEEE
VSRGGLKLEKAMQNFDVTLEGKICMDVGSSTGGFTDCMLQNGAIKVYAVDVGHGQLDWKL
HHCCCCCHHHHHHHCCEEECCEEEEEECCCCCCCCCEEECCCCEEEEEEECCCCEEEEEE
RNDERVVCMEKTNIRYVTPDDVADRIQFSSIDVSFISLTKVLTPVRNLLTDDGQIVCLIK
CCCCEEEEEECCCEEEECCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
PQFEAGREKVGKHGVVRDKDVHIEVINKVIDYAMSIGFEILNLEFSPVKGPEGNIEYLLH
CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHEEE
LQKIAEPQIKEIPFVVENVVEKAHEVL
EHHHCCCCHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKERLDVLLVNKGLATSREKAKAIIMSGNVYVDGQKEDKAGQSFPDTAVIEVRGTTLKY
CCCCEEEEEEECCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCEEEEEEECCEEEE
VSRGGLKLEKAMQNFDVTLEGKICMDVGSSTGGFTDCMLQNGAIKVYAVDVGHGQLDWKL
HHCCCCCHHHHHHHCCEEECCEEEEEECCCCCCCCCEEECCCCEEEEEEECCCCEEEEEE
RNDERVVCMEKTNIRYVTPDDVADRIQFSSIDVSFISLTKVLTPVRNLLTDDGQIVCLIK
CCCCEEEEEECCCEEEECCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
PQFEAGREKVGKHGVVRDKDVHIEVINKVIDYAMSIGFEILNLEFSPVKGPEGNIEYLLH
CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHEEE
LQKIAEPQIKEIPFVVENVVEKAHEVL
EHHHCCCCHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]