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The map label for this gene is yubA [H]

Identifier: 238916986

GI number: 238916986

Start: 1064318

End: 1065568

Strand: Reverse

Name: yubA [H]

Synonym: EUBELI_01055

Alternate gene names: 238916986

Gene position: 1065568-1064318 (Counterclockwise)

Preceding gene: 238916987

Following gene: 238916985

Centisome position: 49.7

GC content: 32.77

Gene sequence:

>1251_bases
ATGAAGAAATATTCTTTCAAAAGATATGCAGGAGTTACAATGGCATTATTTGGGGCAGCTGCGCTGTCCCTATTGCTTTT
TTTTGCATTATTCAGAATTGATGCCATCCACAAAGCATTTTCGCATATATGCAGAACTCTTATGCCTTTTATAATTGGCG
GGGCATTAGCATATGTAATATGTCCAATATGTAATTTCTTCGATAATATATATAATAAGGTATTTAAGTTTATTAAGAAT
GAGAAAAAAAAGAAAAGCCTGTCCAATAATCTTAGTGTGTTTACAGGGCTTCTTATAGCAATTCTGTTCATATATTTTAT
GATTATTGTTATTATTCCTAATCTTGTAAACAGTGTTGTACGTCTTATCCAGATTATTCCTGATAATGTCAATAAAGTTA
TTGATTTTGTACAGAAGTTTCTTAACGAGAATGAAACTCTTATGAAATATTCAGAGAATATTATTGATAAAACATATACA
TTTATTAATGACTGGCTTGGTAACGAGTTTCTTGGATATGCACAGGGAATTGCTACCGGTGTTTCAACTGGTGTAGTTAA
TATTATTGTTGTACTTTTTAATGTTCTTATCGGATTTATTGTTGCAGCGTATCTTCTTACAGCAAGAAAAAAGCTTGCAA
AGCAGGGAGAGATGGTTGTCTATAGTATATTCAAGAAAGAACGTGCTGCCAGCGTTATGGAAGAGATTAAGTATACTGAT
AAGGTGTTCAGCGGCTTTGTTAATGGCAAAATCCTTGATGCCTTTGTAATAGCACTTATATGTTTTATATCACTTAAGAT
ATTTACAATATGTAATCCTGGCAAAGAGATGATGAGTGAGATTCTTATTGCATTCATTGTTGGAATATTTAATGTTATTC
CTTTCTTTGGCTGGTACATAGCATGGTTTATTGGAGCTTTATTATGTCTTATTGTCAATCCTGCACAGTGCCTGTTCTTT
GTAATATTTAATTTTATATTACAGCAGATTGACGGTAATATTATCGGGCCTAAAATTCTTGGTAATACTACAGGAATCTC
AAGTTTCTGGGTATTGTTTGCAATACTCCTCTTTGGTGATATATGGGGATTTGCAGGGATGCTTTTAGGAGTTCCTATAT
TTGCAGTTATATATCATCTTATTAAGAAATGGGTGTTTAAGAGACTGAAGATTAACGGAATGGAGAATTTAAGCGAAGAA
TATGAAATGGAATATCCTCCTAATGAACGTGAAAAGAGGCTTGAAAGCTGA

Upstream 100 bases:

>100_bases
AACACAAGGATGAGATTGTTGACAAGCTTGAAGCAGCAGGTTTAAGACCTAGAATTGTTAAAGTAAACATTTAATCACTA
TCTTCAGCAGAGGGAAATCT

Downstream 100 bases:

>100_bases
TTTAATAAATTTTTCAAAAGTGTCAAGTAAAAATGCTTGACACTTTTTTTGATATCTGATATTATACTCAAGGCTTATGA
GTCAATCATGGCTTATATGA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MKKYSFKRYAGVTMALFGAAALSLLLFFALFRIDAIHKAFSHICRTLMPFIIGGALAYVICPICNFFDNIYNKVFKFIKN
EKKKKSLSNNLSVFTGLLIAILFIYFMIIVIIPNLVNSVVRLIQIIPDNVNKVIDFVQKFLNENETLMKYSENIIDKTYT
FINDWLGNEFLGYAQGIATGVSTGVVNIIVVLFNVLIGFIVAAYLLTARKKLAKQGEMVVYSIFKKERAASVMEEIKYTD
KVFSGFVNGKILDAFVIALICFISLKIFTICNPGKEMMSEILIAFIVGIFNVIPFFGWYIAWFIGALLCLIVNPAQCLFF
VIFNFILQQIDGNIIGPKILGNTTGISSFWVLFAILLFGDIWGFAGMLLGVPIFAVIYHLIKKWVFKRLKINGMENLSEE
YEMEYPPNEREKRLES

Sequences:

>Translated_416_residues
MKKYSFKRYAGVTMALFGAAALSLLLFFALFRIDAIHKAFSHICRTLMPFIIGGALAYVICPICNFFDNIYNKVFKFIKN
EKKKKSLSNNLSVFTGLLIAILFIYFMIIVIIPNLVNSVVRLIQIIPDNVNKVIDFVQKFLNENETLMKYSENIIDKTYT
FINDWLGNEFLGYAQGIATGVSTGVVNIIVVLFNVLIGFIVAAYLLTARKKLAKQGEMVVYSIFKKERAASVMEEIKYTD
KVFSGFVNGKILDAFVIALICFISLKIFTICNPGKEMMSEILIAFIVGIFNVIPFFGWYIAWFIGALLCLIVNPAQCLFF
VIFNFILQQIDGNIIGPKILGNTTGISSFWVLFAILLFGDIWGFAGMLLGVPIFAVIYHLIKKWVFKRLKINGMENLSEE
YEMEYPPNEREKRLES
>Mature_416_residues
MKKYSFKRYAGVTMALFGAAALSLLLFFALFRIDAIHKAFSHICRTLMPFIIGGALAYVICPICNFFDNIYNKVFKFIKN
EKKKKSLSNNLSVFTGLLIAILFIYFMIIVIIPNLVNSVVRLIQIIPDNVNKVIDFVQKFLNENETLMKYSENIIDKTYT
FINDWLGNEFLGYAQGIATGVSTGVVNIIVVLFNVLIGFIVAAYLLTARKKLAKQGEMVVYSIFKKERAASVMEEIKYTD
KVFSGFVNGKILDAFVIALICFISLKIFTICNPGKEMMSEILIAFIVGIFNVIPFFGWYIAWFIGALLCLIVNPAQCLFF
VIFNFILQQIDGNIIGPKILGNTTGISSFWVLFAILLFGDIWGFAGMLLGVPIFAVIYHLIKKWVFKRLKINGMENLSEE
YEMEYPPNEREKRLES

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=313, Percent_Identity=21.0862619808307, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 47255; Mature: 47255

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]